Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02078 ATGAGCATCTCCACCACCGTTTTCTCTGACCCACTCTTTAAACTATGCCACTACCGAAACAGAGTAGCTTCCATTCACCGTTTCAAGCCAAATCAGCACACTCTCTTTTCCTCTTCAATATTCTCCAATAATAATAACTATGATTCTTGTTCTTGGTCATTCAAGCCACCCCACAAGTTTTTTCGTCCAAAGTTTGAAGCTTTTGCTGTAAATACTGATACCCTTGAACCCCTTCAAGCCTCTGATGTTGTCTTCAATCAGATTTATCCCATCAACAGAGTTGAACTGGTGGAGGGAAAGGTCTTTATAAGATTAGATCAAGGGAAAGATTTGGAGAATTTGGAGCTTACAGTTGGATGCAGTCTACCAGGAAAATGGATTCTACATTGGGGAGTTTCGCGCGTCGATGATATTGGAAGTGAATGGGATCAGCCTCCGCGTGAAATGATTCCTCCCGAATCTGTTCTTATAAAGGACTATGCAATAGAGACACCATTGAAGAAATCATCATCGGATTCTAAAGGAGATACTTTTCATGAAGTCAAGATTGGTCTTAAACCAAGCGATGAGATTTCAGCAATTAATTTTGTTCTCAAGGACGAGGAAACTGGTAATTCGTATCACCACAAAGGAAGAGATTTCAAGGTTCCTCTGGTCAACAATCTTAAGGAGGGTGCTAATTTAATTGGACCTAAAACAGGCTTTAATGTGTGGCCAGGGGCCTTAGGGCAGACATCTAACACTCTCGTTGAGTCTGAAGCAACAGAGGACAAAGCTCATGAAAACAACAGTGAATCTGAAAATCCAAAAGAGGGAAGTAGTCAAGTCAAAAGTTTCTATGTAGAACTTCCTGTTACCAAGGAAGTTACTGTCAATAACTCTATCAGTGTCTCCATTAAGAAATGCTTGAAAACAGCTAAAAATCTCTTAGATTTAGAAACAGATGTACCGGGAGATATTCTGCTTCACTGGGGAGTTTGTAGAGATGATTTAAGAAAGTGGGAAGCTCCACCTGCTCCTCATCCACCGGAAACTGTCGCATTTAAAGACAAAGCTTTGAGAACTCAATTAAAGTCAAAAGGCAGTGGAGAGGGAAGTTCAGTACAAATCTCTTTGGAAGAAGAATTTTCAGGATTTCTTTTTGTTCTTAAGCTAAATGGAAATTCTTGGTTAAATTACGAAGGAAACGATTTTTACGTCCCTCTCTCAACTTCTGGTAACTTAATTATCGGAAACATAGAGGATCAATCAACAGTCGTACAGAGTGAAGTGACTGAAGAACCAAGTCAAGAGGAATCCGACTCTATATTTACCGATGAAATAATCACTGAAATAAGGCATTTGGTTACGGGCATTTCATCTGAGAAGCGTCGAAAAACAAAATCCAAAGAAGCGCAAGAAGTCATTCTTCAAGAGATCGAAAGACTGGCTGCTGAAGCCTACAGTATCTTCAGAACCTCCGTTCCAGCTTTCTCAGAGGAAACTATTGTGGAACCCGAAGTTGTGCCTGAGGTTCCTCTAAAAATAACTTCGGGAACAGGCACTGGGTTTGAAGTAGTATGCCAAGGGTTTAACTGGGAATCTCATAAATCTGGAAGATGGTACATGGAGCTTAAAGAGAAAGCTGCGGAATTATCGGCTCTTGGATTCACTGTGATTTGGTTACCACCACCTACAGATTCTGTTTCACCCGAAGGATACATGCCGAGGGATTTATATGATTTAAATTCTAGATATGGTAGCTTTGATGAATTGAAGGATGTGGTGAAAACATTTCATAAAGCTGGAATCAAAGTGCTAGGAGATGCTGTTTTGAATCACCGCTGTGCACAACATCAGAATCATAATGGTATTTGGAACATATTTGGAGGTCGCCTCAATTGGGACGATCGTGCCGTTGTTGCTGATGATCCTCATTTTCAGGGGAGGGGAAACAAGAGTAGCGGAGATAATTTCCATGCGGCTCCAAACATTGATCATTCACAGGACTTTGTGAGAAAAGATCTTACAGAATGGTTATGCTGGTTAAGGGAAGAAATTGGGTATGATGGGTGGAGGCTTGACTTTATCAGAGGATTTTGGGGTGGCTATGTAAAGGACTACATGGACGCTACTGAACCGTACTTTGCTGTGGGAGAGTATTGGGATTCCCTCAGTTATACGTATGGTGAAATGGATCATAATCAAGATGCGCACAGACAGAGGATAGTTGACTGGATTAGTGCTGCCGGGGGTACTGCTGGTGCATTTGATGTTACAACCAAAGGGATTCTTCACTCTGCGTTGGATAGATGTGAATATTGGCGCTTGTCAGATCAGAAGGGAAAACCACCCGGCGTTCTTGGATGGTGGCCATCTCGTGCTGTTACTTTTATAGAAAATCATGACACTGGTTCTACACAGGGTCACTGGCGATTTCCCCACGAAAAAGAAATGCAAGGATACGCGTACACTCTTACTCACCCAGGAACTCCATCTGTGTTCTTTGACCATATTTTCTCTCACTATAAAACTGAAATAGCGGCACTTATCTCTATAAGGAAACGGAACGGGATCAACTGCAGGAGCACGGTTCAAATTTCCAAGGCAGATAGGGATGTTTATGCTGCTATCATTGACGAAAAAGTCGCTATGAAGATTGGTCCTGGTCATTTTGAACCACCTAGTGGTTCCCAAAACTGGTCATCAGCTTGGGAGGGAAGAGACTATATGATTTGGGAGGCATCATAA 2730 0.4183 MSISTTVFSDPLFKLCHYRNRVASIHRFKPNQHTLFSSSIFSNNNNYDSCSWSFKPPHKFFRPKFEAFAVNTDTLEPLQASDVVFNQIYPINRVELVEGKVFIRLDQGKDLENLELTVGCSLPGKWILHWGVSRVDDIGSEWDQPPREMIPPESVLIKDYAIETPLKKSSSDSKGDTFHEVKIGLKPSDEISAINFVLKDEETGNSYHHKGRDFKVPLVNNLKEGANLIGPKTGFNVWPGALGQTSNTLVESEATEDKAHENNSESENPKEGSSQVKSFYVELPVTKEVTVNNSISVSIKKCLKTAKNLLDLETDVPGDILLHWGVCRDDLRKWEAPPAPHPPETVAFKDKALRTQLKSKGSGEGSSVQISLEEEFSGFLFVLKLNGNSWLNYEGNDFYVPLSTSGNLIIGNIEDQSTVVQSEVTEEPSQEESDSIFTDEIITEIRHLVTGISSEKRRKTKSKEAQEVILQEIERLAAEAYSIFRTSVPAFSEETIVEPEVVPEVPLKITSGTGTGFEVVCQGFNWESHKSGRWYMELKEKAAELSALGFTVIWLPPPTDSVSPEGYMPRDLYDLNSRYGSFDELKDVVKTFHKAGIKVLGDAVLNHRCAQHQNHNGIWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLTEWLCWLREEIGYDGWRLDFIRGFWGGYVKDYMDATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIVDWISAAGGTAGAFDVTTKGILHSALDRCEYWRLSDQKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPHEKEMQGYAYTLTHPGTPSVFFDHIFSHYKTEIAALISIRKRNGINCRSTVQISKADRDVYAAIIDEKVAMKIGPGHFEPPSGSQNWSSAWEGRDYMIWEAS 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02078 909 MobiDBLite consensus disorder prediction 246 275 - -
Car07g02078 909 Gene3D Glycosidases 518 851 - -
Car07g02078 909 Gene3D - 852 908 IPR013780 -
Car07g02078 909 CDD AmyAc_arch_bac_plant_AmyA 519 858 - -
Car07g02078 909 PANTHER ALPHA-AMYLASE 86 909 - -
Car07g02078 909 SUPERFAMILY Glycosyl hydrolase domain 852 907 - -
Car07g02078 909 Pfam Alpha-amylase C-terminal beta-sheet domain 849 907 IPR012850 GO:0004556|GO:0005509|GO:0005975
Car07g02078 909 SMART aamy 518 847 IPR006047 GO:0005975
Car07g02078 909 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 86 909 - -
Car07g02078 909 SMART alpha-amyl_c2 848 908 IPR012850 GO:0004556|GO:0005509|GO:0005975
Car07g02078 909 Pfam Alpha amylase, catalytic domain 545 798 IPR006047 GO:0005975
Car07g02078 909 MobiDBLite consensus disorder prediction 253 267 - -
Car07g02078 909 SUPERFAMILY (Trans)glycosidases 515 835 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02078 Car-Chr7 25467890 25475934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02078 65 909 Glycoside Hydrolase AT1G69830 66.391 0.0 1173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02078 K01176 - gmx:100788193 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02078 07 25467890 25475934 Car07g02078 07 25467890 25475934 ECH
Car07g02078 07 25467890 25475934 Car02g00704 02 9358545 9364928 PCT