Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02024 ATGAATAAACAATTTCAACTTCTAAATCTCATCTTCACTTTCATAATTTCATTCTCTCTTACTTTCATCGTTGTTTCAGCTCGTCTATTTCCCGATGTTCCCTCTTGGATACCGTCTGGCACACCTCCTGCTGGCGCGTGGGACGCGTTTCGCAACTTCACCGGTTGCCATCATGGTGTAAAGTACGACGGCCTTTCCAATTTAAAAAACTACTTTCAGCACTTCGGTTACATTTCCCACGCGCCACAATTGAACTTCTCCGACAATTTCGATGATGCGCTTGAAAACGCAATCAAAACTTACCAGAAGAATTTCAATCTTAATATAACTGGTGAACTCGATGATAACACTCTTCGGCAGATTGTTTTGCCGCGATGCGGTGTTGCGGATATTATTAACGGCACGACCGCCATGAACGCCGGCAAGGAGAAAGAAACGACGTCGTACGGTCATAGCAAGCCAAAATTCCATACGCTCTCGCACTTCACAGTGTTTCCCGGCCAACCGCGGTGGCCGGAAGGAAAGCAGGAGCTGACTTATGCGTTCTTCCCTGGCAACGACCTCAGCAAAACCGTGAAAAGTGTCTTCGCAACCGCGTTTGCGCGGTGGTCGGAGGTCACGACGCTGACGTTCACGGAAACAGAGTCGTATTCCAGCGCCGATATGAAGATCGGATTCTTCGAAGGCGACCATGGCGACGGTGAGCCGTTCGATGGAAGTTTAGGAACGCTGGCACACGCTTTCTCTCCGACGAACGGGAGGTTTCATCTTGATGCCGCCGAGGACTGGGTAGTGTCCGGCGATATATCTAAATCTTCGCTTCCAACGGCGGTTGATTTGGAATCAGTGGCGGTGCACGAGATTGGGCACTTGTTAGGATTAGGTCACTCGTCGGTGGAGGATGCAATTATGTTTCCGACAATATCGTCACGGATGAAGAAAGTGGTGCTGGCGGAGGATGATGTGAGGGGAATTCAATACCTCTATGGTACTAATCCGAGCTACAATGGCTCCACCACCACGTCGTCGCCGGAGACGAACTCCGGGAATTGTGGTCGGAGCCTTACTACTGTGTGGTCTCTGTGGAGTCTTTTCACTTttttgacctttgcattttcgccttttgtattatag 1134 0.4832 MNKQFQLLNLIFTFIISFSLTFIVVSARLFPDVPSWIPSGTPPAGAWDAFRNFTGCHHGVKYDGLSNLKNYFQHFGYISHAPQLNFSDNFDDALENAIKTYQKNFNLNITGELDDNTLRQIVLPRCGVADIINGTTAMNAGKEKETTSYGHSKPKFHTLSHFTVFPGQPRWPEGKQELTYAFFPGNDLSKTVKSVFATAFARWSEVTTLTFTETESYSSADMKIGFFEGDHGDGEPFDGSLGTLAHAFSPTNGRFHLDAAEDWVVSGDISKSSLPTAVDLESVAVHEIGHLLGLGHSSVEDAIMFPTISSRMKKVVLAEDDVRGIQYLYGTNPSYNGSTTTSSPETNSGNCGRSLTTVWSLWSLFTFLTFAFSPFVL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02024 377 PRINTS Matrixin signature 121 134 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car07g02024 377 PRINTS Matrixin signature 196 211 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car07g02024 377 PRINTS Matrixin signature 220 248 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car07g02024 377 PRINTS Matrixin signature 283 308 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car07g02024 377 PRINTS Matrixin signature 317 330 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car07g02024 377 SUPERFAMILY PGBD-like 68 131 IPR036365 -
Car07g02024 377 CDD ZnMc_MMP 170 330 IPR033739 GO:0008237|GO:0008270
Car07g02024 377 PANTHER MATRIX METALLOPROTEINASE 11 369 - -
Car07g02024 377 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 165 334 - -
Car07g02024 377 Gene3D Collagenase (Catalytic Domain) 55 336 IPR024079 GO:0008237
Car07g02024 377 Pfam Matrixin 174 330 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Car07g02024 377 PANTHER MATRIX METALLOPROTEINASE 11 369 - -
Car07g02024 377 SMART col_5 167 331 IPR006026 GO:0006508|GO:0008237|GO:0008270
Car07g02024 377 Pfam Putative peptidoglycan binding domain 65 120 IPR002477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02024 Car-Chr7 24073999 24075560 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02024 - - aprc:113858627 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02024 07 24073999 24075560 Car07g02024 07 24073999 24075560 ECH
Car02g00641 02 8211158 8212557 Car07g02024 07 24073999 24075560 PCT