Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00641 ATGAGTACCCAAAACCAATATTATTACACTTTGGCAATATTAACACTAATTAGCGTCACATTAAGTCCAGTTTCAGCTCGTTTCTTCCCTAATCCATCTTCAATCCCTACATGGATGTCAAACAACGCGCCACCAGGCGCGTGGGACGCATACCGAAATTTCACCGGCTGCAGTCCTGGTAAAACATACGACGGCCTCTCCAAACTCAAAAACTACTTTCAACGTTTCGGTTACATCACCAACGCGCCGCCGTCAAATTTCACCGACGACTTCGACGACGCTTTAGAATCCGCTGTACGCGCTTACCAACAAAATTTCAACCTCAACGTCACCGGCGAACTCGACAACGCAACAATGAACTACATTGTTAAGCCGCGTTGCGGCGTCGCCGACATCATCAACGGCACAACCTCCATGAACTCCGGCAAGTTCAATTTCAATAACACAAGCGAAAACAAAGAAAATCCAAAATTCCACACCGTCGCACATTATTCATTCTTCCCCGGCGAGCCACGGTGGCCGGCGGGAACTAAATCACTAACCTACGCTTTCGATCCAAACGAAAATCTGGACGAAACAACTAAACAAGTTTTCGCAAACGCGTTTAATCAATGGTCAAAAGTAACGACAATAACGTTCAGCGAAACGACGTCGTTTAGTACCGCGGATATTAAAATAGGATTCTACAGTGGGGACCACGGAGACGGAGAAGCATTTGACGGCGTTTTAGGGACGTTAGCACACGCGTTTTCACCAACTGACGGGAGATTCCACTTAGATAAAGCGGAAGACTGGGTAGTTAGCGGAGACGTAACGGAGTCTACTTTATCGAACGCTGTTGATTTGGAATCCGTTGCCGTTCATGAAATAGGACACCTTTTAGGATTAGGACACTCGTCCGTTGAAGAGGCTATTATGTACCCTACGATAAGTTCTAAAACGAGGAAGGTTGAACTTGTGAATGATGATATTGATGGGATTCAACAGCTTTATGGTTCTAACCCGAATTTTACTGGGACTTCTGCTACTACTTCGAGGGATAGAGATTCTAGTTATGGTTTTCGCCACGTGGCGTCGTTGTTTTTGTCCTTGTTGTTCATTGGGTTTGCATGTTTGAGTTTATAG 1125 0.4533 MSTQNQYYYTLAILTLISVTLSPVSARFFPNPSSIPTWMSNNAPPGAWDAYRNFTGCSPGKTYDGLSKLKNYFQRFGYITNAPPSNFTDDFDDALESAVRAYQQNFNLNVTGELDNATMNYIVKPRCGVADIINGTTSMNSGKFNFNNTSENKENPKFHTVAHYSFFPGEPRWPAGTKSLTYAFDPNENLDETTKQVFANAFNQWSKVTTITFSETTSFSTADIKIGFYSGDHGDGEAFDGVLGTLAHAFSPTDGRFHLDKAEDWVVSGDVTESTLSNAVDLESVAVHEIGHLLGLGHSSVEEAIMYPTISSKTRKVELVNDDIDGIQQLYGSNPNFTGTSATTSRDRDSSYGFRHVASLFLSLLFIGFACLSL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00641 374 PANTHER MATRIX METALLOPROTEINASE 13 367 - -
Car02g00641 374 SUPERFAMILY PGBD-like 69 132 IPR036365 -
Car02g00641 374 Pfam Matrixin 177 332 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Car02g00641 374 Pfam Putative peptidoglycan binding domain 66 120 IPR002477 -
Car02g00641 374 CDD ZnMc_MMP 172 332 IPR033739 GO:0008237|GO:0008270
Car02g00641 374 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 166 336 - -
Car02g00641 374 SMART col_5 169 333 IPR006026 GO:0006508|GO:0008237|GO:0008270
Car02g00641 374 Gene3D Collagenase (Catalytic Domain) 57 338 IPR024079 GO:0008237
Car02g00641 374 PANTHER MATRIX METALLOPROTEINASE 13 367 - -
Car02g00641 374 PRINTS Matrixin signature 122 135 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car02g00641 374 PRINTS Matrixin signature 198 213 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car02g00641 374 PRINTS Matrixin signature 222 250 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car02g00641 374 PRINTS Matrixin signature 285 310 IPR021190 GO:0004222|GO:0006508|GO:0008270
Car02g00641 374 PRINTS Matrixin signature 319 332 IPR021190 GO:0004222|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00641 Car-Chr2 8211158 8212557 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00641 - - gmx:100781471 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00641 02 8211158 8212557 Car07g02024 07 24073999 24075560 PCT