Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01974 ATGGCTGAAGAGAAGAACATGGTGGAATTTGAATCCTGTATGAAGAGACAAAAAGATAATGATAATGAAGAAAATGGTAAAGACCCATATGGTAATGGTATTTCATCTGTCATTCCTGGGTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGAGAAGCTCACTCCTTGAAGATAGAAAAGATTTTGTTTCAAGGAAAATCTGAATACCAGAAAGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTTATTCAACTCACAGAAAGGGATGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTGCAAACCCGAAAAAGGTTTTGGTTATTGGTGGAGGTGATGGAGGAGTCCTGCGGGAAGTATCGCGTCATTCTTCAATCGAAAAGATAGACATTTGTGAAATTGACAATATGGTTGTTGAAGTCTCCAAACAATATTTCCCTGAAGTTGCAGTAGGGTTTAATGATCCACGTGTGACACTTCGCATCGGTGATGGAGTTGCATTTTTGAAGGCAGCCGCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGACCCTATTGGTCCTGCTCAGGAGCTTTTCGAAAAGCCCTTTTTTCAGTCAGTAGCGAGGGCGCTTCGTCCGGGAGGAGTTATGTGCACTCAGGCAGAAAGTATATGGCTTCATATGGATATCATTGAGGACATTGTGTCTAATTGTCGTCAGATTTTCAATGGCTCCGTCAACTATGCTTGGACTACAGTTCCTACATATCCAAGTGGAATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCTACTGTGGATTTCAAGCATCCAGTGAATCCGATAGATGAAAAAGAGTCTCAGAAGTCAGTAAGACCACTGAAATTTTACAACTCTGAGATTCATACAGCAGCTTTCTGTCTCCCATCGTTTGCGAAGAGGAAAATTAGTTCCAAAGAAAATTGA 990 0.4131 MAEEKNMVEFESCMKRQKDNDNEENGKDPYGNGISSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIANPKKVLVIGGGDGGVLREVSRHSSIEKIDICEIDNMVVEVSKQYFPEVAVGFNDPRVTLRIGDGVAFLKAAAEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVMCTQAESIWLHMDIIEDIVSNCRQIFNGSVNYAWTTVPTYPSGMIGFMLCSTEGPTVDFKHPVNPIDEKESQKSVRPLKFYNSEIHTAAFCLPSFAKRKISSKEN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01974 329 Gene3D Spermidine synthase, tetramerisation domain 33 91 IPR037163 -
Car07g01974 329 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 39 276 IPR030374 -
Car07g01974 329 PANTHER SPERMIDINE/SPERMINE SYNTHASE 23 329 IPR001045 GO:0003824
Car07g01974 329 Pfam Spermidine synthase tetramerisation domain 40 94 IPR035246 -
Car07g01974 329 Pfam Spermine/spermidine synthase domain 97 284 - -
Car07g01974 329 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 118 131 IPR030373 -
Car07g01974 329 TIGRFAM speE: spermidine synthase 41 319 IPR001045 GO:0003824
Car07g01974 329 PANTHER SPERMIDINE SYNTHASE-RELATED 23 329 - -
Car07g01974 329 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 37 324 IPR029063 -
Car07g01974 329 PIRSF Spermidine_synth 31 329 IPR030668 GO:0006595
Car07g01974 329 Hamap Polyamine aminopropyltransferase [speE]. 40 325 IPR001045 GO:0003824
Car07g01974 329 MobiDBLite consensus disorder prediction 1 31 - -
Car07g01974 329 MobiDBLite consensus disorder prediction 1 26 - -
Car07g01974 329 CDD AdoMet_MTases 117 228 - -
Car07g01974 329 Gene3D Vaccinia Virus protein VP39 92 329 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01974 Car-Chr7 23045848 23050803 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01974 K00797 - gmx:100776863 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01974 07 23045848 23050803 Car07g01974 07 23045848 23050803 ECH
Car02g00593 02 7090635 7094754 Car07g01974 07 23045848 23050803 PCT