Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01145 ATGAGGAGGGACATGGAATTCGAGCGTGTTCTTAGTTACTTCGATGAAGACGGTGACGGGAAGATTTCACCTTATGAGTTAAGAAGTAGAATGACAAAGATCGGAGGAGAATTTCTATTGAAAGAAGCGGAAATTGCTATTGAGTCATTGGATTCTGATGGTGATGGGTTATTGAGTTTGGAGGATTTGATAACCCTTATGGAATCAGGGGGCGAGGAAGAGAAATTGAAAGATTTGAAGGAGGCTTTTGAAATGTATGATACGGAAAGGTGTGGGTTCATAACACCTAAGAGTTTGAAGAGGATGTTGAAAAAATTGGGGGATTTTAAGTCTATTGAGGAATGTAAAGTTATGATTGGTCGATTTGATTTAGATGGGGATGGTGTGCTTAGTTTTGAAGAATTCAGAGTTATGATGGAGTGA 423 0.3901 MRRDMEFERVLSYFDEDGDGKISPYELRSRMTKIGGEFLLKEAEIAIESLDSDGDGLLSLEDLITLMESGGEEEKLKDLKEAFEMYDTERCGFITPKSLKRMLKKLGDFKSIEECKVMIGRFDLDGDGVLSFEEFRVMME 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01145 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Car07g01145 140 CDD EFh 78 139 IPR002048 GO:0005509
Car07g01145 140 CDD EFh 6 67 IPR002048 GO:0005509
Car07g01145 140 SMART efh_1 114 140 IPR002048 GO:0005509
Car07g01145 140 SMART efh_1 78 106 IPR002048 GO:0005509
Car07g01145 140 SMART efh_1 42 70 IPR002048 GO:0005509
Car07g01145 140 SMART efh_1 6 34 IPR002048 GO:0005509
Car07g01145 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Car07g01145 140 Gene3D - 2 70 - -
Car07g01145 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Car07g01145 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 140 - -
Car07g01145 140 Pfam EF-hand domain pair 77 139 IPR002048 GO:0005509
Car07g01145 140 Pfam EF-hand domain pair 9 67 IPR002048 GO:0005509
Car07g01145 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Car07g01145 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Car07g01145 140 SUPERFAMILY EF-hand 5 139 IPR011992 -
Car07g01145 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Car07g01145 140 Gene3D - 71 140 - -
Car07g01145 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 140 - -
Car07g01145 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01145 Car-Chr7 10226440 10227302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01145 64 140 EF-hand Containing Proteins AT1G76650 35.065 1.93e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01145 K13448 - gmx:100816563 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01145 07 10226440 10227302 Car05g01632 05 61095042 61095945 ECH
Car07g01145 07 10226440 10227302 Car07g01145 07 10226440 10227302 ECH