Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01632 ATGATGATGATGAAAGACGCTGGATTCGAGCACGTTCTTCGATATTTCGACGAAGATGGTGATGGAAAAGTTTCACCTAAAGAGCTAAGGCAAAAGTTGAGAGAAATGGGAGAGGAGGTTTTGTTGAAAGAAGCTGAAATGGCTATTGAAGCAATGGATTCAGATGGTGATGGATATTTGAGTTTGGAGGATTTGGTTACTTTGATGGAGGAAGGTGGAGAGGAACAAAAGTTGAAGGATTTAAGAGAAGCATTTGAGATGTATAATGATAGTGATAAATGTGGATTTATAACACCAAAGAGTTTGAAAAGGATGCTTAAGAAAATTGGTGAGTCTAAATCTATTGATGAATGTAAAGCTATGATTAAGCATTTTGATTTGAATGGTGATGGTGTGCTTAGCTTTGATGAATTCACACAAATGATGCAGTGA 432 0.3657 MMMMKDAGFEHVLRYFDEDGDGKVSPKELRQKLREMGEEVLLKEAEMAIEAMDSDGDGYLSLEDLVTLMEEGGEEQKLKDLREAFEMYNDSDKCGFITPKSLKRMLKKIGESKSIDECKAMIKHFDLNGDGVLSFDEFTQMMQ 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01632 143 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 143 - -
Car05g01632 143 Gene3D - 74 143 - -
Car05g01632 143 SMART efh_1 44 72 IPR002048 GO:0005509
Car05g01632 143 SMART efh_1 8 36 IPR002048 GO:0005509
Car05g01632 143 SMART efh_1 117 143 IPR002048 GO:0005509
Car05g01632 143 SMART efh_1 80 109 IPR002048 GO:0005509
Car05g01632 143 CDD EFh 9 69 IPR002048 GO:0005509
Car05g01632 143 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
Car05g01632 143 CDD EFh 80 143 IPR002048 GO:0005509
Car05g01632 143 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 143 - -
Car05g01632 143 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Car05g01632 143 Gene3D - 3 73 - -
Car05g01632 143 Pfam EF-hand domain pair 13 69 IPR002048 GO:0005509
Car05g01632 143 Pfam EF-hand domain pair 79 143 IPR002048 GO:0005509
Car05g01632 143 SUPERFAMILY EF-hand 9 143 IPR011992 -
Car05g01632 143 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Car05g01632 143 ProSiteProfiles EF-hand calcium-binding domain profile. 113 143 IPR002048 GO:0005509
Car05g01632 143 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Car05g01632 143 ProSiteProfiles EF-hand calcium-binding domain profile. 76 112 IPR002048 GO:0005509
Car05g01632 143 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01632 Car-Chr5 61095042 61095945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01632 5 143 EF-hand Containing Proteins AT1G76650 45.714 8.86e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01632 K13448 - gmx:100779557 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01145 07 10226440 10227302 Car05g01632 05 61095042 61095945 ECH
Car05g01632 05 61095042 61095945 Car05g01632 05 61095042 61095945 ECH