Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01078 ATGAAAGAAACAATAAGGTACTTAGCAGGCATTGCAGGGCCTAGTGGTTTTGGCTCAAATTCAACTGCAGAGCAAGTCACTCAAGATTGTTCTTTCCTCCCTCCAAATCTAACTGCTCTCATCACTGGTGCCACTTCAGGTATTGGAGCTGAAACGGCTAGGGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGGTTGGTGCTAGGGACTTGAAAAAGGGTTGTGAAGTTAGAGAGAAAATCCAAAAGGAGAGTCCTAATGCAGAGATTATTCTATTGGAAATTGATCTTAGCTCTCTTGCTTCTGTACAAAGATTTTGTTCAGAGTTTTTAGCTTTAGAATTGCCTCTTAATATTCTCATAAATAATGCAGGAGTATACTCTCAGAACATTGAATTCTCTGAAGAGAAAATTGAAATGACATTTGCTACAAATTACTTAGGACATTTTTTGTTAACAAAAATGCTACTAGAGAAAATGATAGATACTGCAAACAAGACAGGGATTCAAGGAAGAATAATAAATGTTTCTTCGGTAATTCATAGCTGGGTGAAAAGAACTTGCTTTTGTTTCAAAGACATGCTCAATGGAAAAAGTTACAATGGGACACGTGCATATGCTCAATCAAAATTAGCCATGATTCTTCATGTGAAGGAAATGGCTAGACAACTCAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTGCATCCAGGCATTGTGAGGACAGGAATTATTAAAGCACACAAGGGATTAATAACGGATTCCTTGTATTTCATTGCATCAAAGCTGCTTAAATCCATATCACAGGGTGCATCAACAACTTGTTATGTAGCTCTAAGCCGAAAAACAGAAGAGGTGAGTGGAAAATACTTTGCTGATTGTAACGAAAGTTACTGTTCAAGTCTTGCAAACGACGAATCCGAAGCTAAAAAGCTATGGAACAATACAAATACATTGCTTCACAAACGACTAAGACAAGCAGCAATTGGAAGTTCTTCTTCCCTCTTTTCTAGACCCTGTATCTAA 1026 0.3801 MKETIRYLAGIAGPSGFGSNSTAEQVTQDCSFLPPNLTALITGATSGIGAETARVLAKRGVRVVVGARDLKKGCEVREKIQKESPNAEIILLEIDLSSLASVQRFCSEFLALELPLNILINNAGVYSQNIEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTANKTGIQGRIINVSSVIHSWVKRTCFCFKDMLNGKSYNGTRAYAQSKLAMILHVKEMARQLKARNARVTINAVHPGIVRTGIIKAHKGLITDSLYFIASKLLKSISQGASTTCYVALSRKTEEVSGKYFADCNESYCSSLANDESEAKKLWNNTNTLLHKRLRQAAIGSSSSLFSRPCI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01078 341 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 327 - -
Car07g01078 341 Gene3D - 35 325 - -
Car07g01078 341 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Car07g01078 341 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Car07g01078 341 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
Car07g01078 341 PRINTS Glucose/ribitol dehydrogenase family signature 205 224 IPR002347 -
Car07g01078 341 PRINTS Glucose/ribitol dehydrogenase family signature 228 245 IPR002347 -
Car07g01078 341 PANTHER RETINOL DEHYDROGENASE 4 327 - -
Car07g01078 341 CDD retinol-DH_like_SDR_c_like 38 313 - -
Car07g01078 341 Pfam short chain dehydrogenase 38 179 IPR002347 -
Car07g01078 341 Pfam short chain dehydrogenase 197 246 IPR002347 -
Car07g01078 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 IPR002347 -
Car07g01078 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 178 IPR002347 -
Car07g01078 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 224 IPR002347 -
Car07g01078 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 298 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01078 Car-Chr7 9591471 9594809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01078 40 247 Acyl Lipid Metabolism Gene Families AT1G63380 30.233 9.18e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01078 - - gmx:100776567 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01078 07 9591471 9594809 Car07g01078 07 9591471 9594809 ECH
Car07g01078 07 9591471 9594809 Car05g01711 05 62031323 62034155 PCT