Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01711 ATGAAGGCAACACTAAAATACTTGGCAGGAATAGCAGGTCCTAGTGGTTTTGGCTCAAGTTCAACCGCTGAGCAAGTTACTCAAAATTCCTCTCAATTCCTTCCTTCCCATCTAACTGCTCTCATCACTGGTGGGAGTTCTGGTATTGGAGCTGAAACAGCTAGGGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGGTGCGAGGGACTTGAAGAAGGCAAGTGAAGTTAGAGAAAATATACAAAGAGAGAGTCCTAAAGCTGAGGTTATTCTATTGGAGATTGATCTTAGCTCTTTTTGTTCTGTACAAAGATTTTGTACAGAGTTTTTAGCTTTAGATCTTCCACTTAATATTCTAATAAACAATGCGGGCATATTCTCTCAAGATTTGGAGTTCTCTGAAGATAAAATTGAGATGACATTCACCACAAATTACTTAGGACATTTTTTGTTAACAGAAATATTACTAGACAACATGATAGAAACAGCAGAGAAGACAAATATTCAAGGAAGAATAATTAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAGAGATGGTTTTTGTTTCACTGATATACTCAATGGAAAAAACTATAATGGAACACGCACTTATGCTCAATCAAAATTGGCAAATATTTTGCATGCCAAAGAAATAGCCAGACAACTCAAGGTAAGGAATGCAAGAGTAACTATCAATGCAGTACATCCAGGTATTGTGAAGACAGGAATTATTAGAGATCATAAGGGCCTAATAATAGGCTCCTTATTTTTCATTGCATCAAAGTTATTCAAATCGACATCACAGGGTGCATCAACTACATGTTATGTGGCTTTGAGTCCTAAAACAGAAGGAGTGAGTGGGAAATACTTTACAGATTGTAATGAGAGTAAGTGTTCTGGCTTAGCAAATGATGAATTTGAAGCTCAAAAGTTATGGAACAACACTCATGCCTTGCATCAAAAACGACTCCATCAAGCACAATTTGAAGAATTTCTTCCCCTTAAATTTGTAGACTCATTAGTTTAG 1032 0.3692 MKATLKYLAGIAGPSGFGSSSTAEQVTQNSSQFLPSHLTALITGGSSGIGAETARVLAKRGVRVVIGARDLKKASEVRENIQRESPKAEVILLEIDLSSFCSVQRFCTEFLALDLPLNILINNAGIFSQDLEFSEDKIEMTFTTNYLGHFLLTEILLDNMIETAEKTNIQGRIINVSSVIHSWVKRDGFCFTDILNGKNYNGTRTYAQSKLANILHAKEIARQLKVRNARVTINAVHPGIVKTGIIRDHKGLIIGSLFFIASKLFKSTSQGASTTCYVALSPKTEGVSGKYFTDCNESKCSGLANDEFEAQKLWNNTHALHQKRLHQAQFEEFLPLKFVDSLV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01711 343 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 325 - -
Car05g01711 343 Pfam short chain dehydrogenase 39 180 IPR002347 -
Car05g01711 343 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Car05g01711 343 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Car05g01711 343 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Car05g01711 343 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Car05g01711 343 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Car05g01711 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
Car05g01711 343 CDD retinol-DH_like_SDR_c_like 39 314 - -
Car05g01711 343 Gene3D - 35 326 - -
Car05g01711 343 PANTHER RETINOL DEHYDROGENASE 4 325 - -
Car05g01711 343 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Car05g01711 343 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Car05g01711 343 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01711 Car-Chr5 62031323 62034155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01711 41 293 Acyl Lipid Metabolism Gene Families AT1G24360 27.308 6.91e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01711 - - gmx:100801384 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01711 05 62031323 62034155 Car05g01711 05 62031323 62034155 ECH
Car07g01078 07 9591471 9594809 Car05g01711 05 62031323 62034155 PCT