Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01011 ATGGAATTTGAAACATCCTTCAGTACCTCTATTAACCACACTACCACACGTTCTCTTTCTTCACAACAAAGCCTTGCATCAGTTCCTTCCCTCAACTCAACCTCACAACAATTTCATAATTCAACCTTCACATGTCTCGCAACTCTCAAACTCTACACTTGCATTTCCTCTTTAACCCTTTCAGAAAAATTCCTCTACACCGGTTCATCCAACAGAGAAATCACATCATGGAATCGGATTCATCTTCACTCTCACCCTCAACAATCAAATAACACAATAGTTTCTGGAAACGGTGCCATAAAATCCATAGTAATTCATTCAAGCAAGCTTTTCACCGCTCACCAAGACAACAAAATCCGTGTTTGGAAAATCACCATTATCAACAAGGAATCTcaacgacaacagcagcaacaacaacaacacaaGTTCACTCATTTAGCCACGCTTCCAACATTTATTGACCGTTTCTCAAAAATCTTAATCCCGAAAAACCACGTTAAGATTCGAAGGAACAAAAAACGAACATGGGTTCACCACGTTGACACAGTCTCTTCCCTTGCTTTATCAAAAGATGGAACCTTGTTGTACTCTGTTTCGTGGGACAGATCAATCAAGGTTTGGAAAACCAAAGATTTCACATGTTTGGAATCAGTGAACAACGCACATGACGATGCAGTGAATGCAATAGTAGTTTCTAATGATGGGTATGTTTACACTGGATCAACAGATAAAAAAATTAAGGTTTGGACGAAAGATAAAGAAGAGAAGAACAAGAAACACTCTTTGTTATTGGTTGATACTTTGGAGAAACACAATTCTGGGATTAATGCATTGGCACTTAACAGTGATGGTTCTGTTTTATATTCTGGTGCTTGTGATAGATCAATATTGGTATCTGAGAAGGGTGAAAATGGTAATTTGGTGGTGATGGGTGCCCTTCGTGGTCATACAAAGTCTATATTGTGTTTAGCTACGGTTTCTGATTTGGTGTGCAGTGGTTCTGAGGATAAAACAGTTCGAATTTGGAGAGGTAATAATACTAATACTAATAGTGTTCATAGAGACTATTGTTGTTTGGGTGTTTTAGAAGGGCATAAAGGTCCAATTAAGTGTCTAACTGCTGTGCTTGAGTCAGAAGAATCTTTTCTTGTCTATAGTGGTAGTTTGGATTGTGATATTAAGGTTTGGCAGATTTATGTTCCTCTTCTATAA 1212 0.3688 MEFETSFSTSINHTTTRSLSSQQSLASVPSLNSTSQQFHNSTFTCLATLKLYTCISSLTLSEKFLYTGSSNREITSWNRIHLHSHPQQSNNTIVSGNGAIKSIVIHSSKLFTAHQDNKIRVWKITIINKESQRQQQQQQQHKFTHLATLPTFIDRFSKILIPKNHVKIRRNKKRTWVHHVDTVSSLALSKDGTLLYSVSWDRSIKVWKTKDFTCLESVNNAHDDAVNAIVVSNDGYVYTGSTDKKIKVWTKDKEEKNKKHSLLLVDTLEKHNSGINALALNSDGSVLYSGACDRSILVSEKGENGNLVVMGALRGHTKSILCLATVSDLVCSGSEDKTVRIWRGNNTNTNSVHRDYCCLGVLEGHKGPIKCLTAVLESEESFLVYSGSLDCDIKVWQIYVPLL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01011 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 259 IPR001680 GO:0005515
Car07g01011 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 217 IPR001680 GO:0005515
Car07g01011 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 342 - -
Car07g01011 403 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 403 IPR045182 -
Car07g01011 403 SMART WD40_4 169 208 IPR001680 GO:0005515
Car07g01011 403 SMART WD40_4 42 78 IPR001680 GO:0005515
Car07g01011 403 SMART WD40_4 306 343 IPR001680 GO:0005515
Car07g01011 403 SMART WD40_4 211 250 IPR001680 GO:0005515
Car07g01011 403 SMART WD40_4 86 123 IPR001680 GO:0005515
Car07g01011 403 SMART WD40_4 261 300 IPR001680 GO:0005515
Car07g01011 403 SMART WD40_4 355 397 IPR001680 GO:0005515
Car07g01011 403 Gene3D - 158 250 IPR015943 GO:0005515
Car07g01011 403 Gene3D - 251 401 IPR015943 GO:0005515
Car07g01011 403 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 403 - -
Car07g01011 403 SUPERFAMILY WD40 repeat-like 53 397 IPR036322 GO:0005515
Car07g01011 403 Pfam WD domain, G-beta repeat 357 396 IPR001680 GO:0005515
Car07g01011 403 Pfam WD domain, G-beta repeat 311 342 IPR001680 GO:0005515
Car07g01011 403 Pfam WD domain, G-beta repeat 220 249 IPR001680 GO:0005515
Car07g01011 403 Pfam WD domain, G-beta repeat 172 208 IPR001680 GO:0005515
Car07g01011 403 Pfam WD domain, G-beta repeat 266 297 IPR001680 GO:0005515
Car07g01011 403 Gene3D - 6 156 IPR015943 GO:0005515
Car07g01011 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 249 - -
Car07g01011 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 208 - -
Car07g01011 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 352 IPR001680 GO:0005515
Car07g01011 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 298 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01011 Car-Chr7 8962424 8963755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01011 221 397 Acyl Lipid Metabolism Gene Families AT3G18860 27.717 5.91e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01011 - - gmx:100801906 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01011 07 8962424 8963755 Car05g01762 05 62731789 62733062 PCT