Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01762 ATGATGGAATATCACTTTGACAGTGGGTCTTCCTCATCTCAGTCAAACCACAACTACCTTCAACCAACGTCCCTCACTTCACAACGTAGCCTCCTCTCAATCCCTTCCCTcaacaacactcaccaccaccacaaccaccacctcatcacaaccCTCAAAAACCACACATCATCCTACACTTCCTCTCTCACTCTTTTCGGCAATTTCCTCCTCACAGGTTCATCCGACAGAGAAATCACTACATGGAACATAACCTCTCAACAAAACACAACAACAAACAAAGTAATCGCAGGAAAAGGTGCAGTTAAATCTCTAATAATTCAACCAAACACAGACACTCTTTTCAGCGCACACCAAGACCACAAAATCCGCGTTTGGAAATTAACCAACGACCAAACAAAATACACCCATTTAGCAACACTTCCAACACTTGGTGACCGTGCTTCCAAAATTCTAATCCCTAAAAACCATATACAAATTCGTAGACACAAAAAATGCACGTGGGTTCATCACGTGGACACTGTTTCTTCACTTGCTCTGTCTAAAGATGGAAACTTTTTATACTCTGTTTCATGGGACAGAACAATCAAAATCTGGCGAACCAGAGATTTCACTTGTTTGGAATCAATAACCAACGCTCATGATGACGCTATAAACGCGGTTGCAGTTTCTTACAGTGGAGTCGTCTACACTGGATCAGCTGATAAAAAAATCAAAGTATGGAAAAAACTCGAAGATGATAAGAAAGGCAAAGAGAAACAGAAACATTATCTGGTTGACACGTTGGAGAAACACAACTCTGGAATAAATGCATTGGTTTTAAGCAGTGATGAAAGTGTTCTGTATTCAGAAGGACATGAAGGTTCGATTAAGTGTTTAAGTGCAGTTAGTAACTCGGAATCAGAAGGGTCTTTTGTGGTTTATAGTGGTAGTTTGGACTGTCACATAAAGGTGTGGCAGATTTATGTTCCTGCTATCTAA 981 0.3843 MMEYHFDSGSSSSQSNHNYLQPTSLTSQRSLLSIPSLNNTHHHHNHHLITTLKNHTSSYTSSLTLFGNFLLTGSSDREITTWNITSQQNTTTNKVIAGKGAVKSLIIQPNTDTLFSAHQDHKIRVWKLTNDQTKYTHLATLPTLGDRASKILIPKNHIQIRRHKKCTWVHHVDTVSSLALSKDGNFLYSVSWDRTIKIWRTRDFTCLESITNAHDDAINAVAVSYSGVVYTGSADKKIKVWKKLEDDKKGKEKQKHYLVDTLEKHNSGINALVLSSDESVLYSEGHEGSIKCLSAVSNSESEGSFVVYSGSLDCHIKVWQIYVPAI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01762 326 Gene3D - 157 323 IPR015943 GO:0005515
Car05g01762 326 Gene3D - 31 148 IPR015943 GO:0005515
Car05g01762 326 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 284 324 - -
Car05g01762 326 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 8 283 - -
Car05g01762 326 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 283 IPR045182 -
Car05g01762 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 242 IPR001680 GO:0005515
Car05g01762 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 67 92 IPR001680 GO:0005515
Car05g01762 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 199 - -
Car05g01762 326 SMART WD40_4 255 320 IPR001680 GO:0005515
Car05g01762 326 SMART WD40_4 161 200 IPR001680 GO:0005515
Car05g01762 326 SMART WD40_4 45 83 IPR001680 GO:0005515
Car05g01762 326 SMART WD40_4 88 127 IPR001680 GO:0005515
Car05g01762 326 SMART WD40_4 203 242 IPR001680 GO:0005515
Car05g01762 326 PRINTS G protein beta WD-40 repeat signature 70 84 IPR020472 -
Car05g01762 326 PRINTS G protein beta WD-40 repeat signature 307 321 IPR020472 -
Car05g01762 326 PRINTS G protein beta WD-40 repeat signature 229 243 IPR020472 -
Car05g01762 326 SUPERFAMILY WD40 repeat-like 45 321 IPR036322 GO:0005515
Car05g01762 326 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 284 324 IPR045182 -
Car05g01762 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 136 IPR001680 GO:0005515
Car05g01762 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 209 IPR001680 GO:0005515
Car05g01762 326 MobiDBLite consensus disorder prediction 1 22 - -
Car05g01762 326 Pfam WD domain, G-beta repeat 101 127 IPR001680 GO:0005515
Car05g01762 326 Pfam WD domain, G-beta repeat 206 242 IPR001680 GO:0005515
Car05g01762 326 Pfam WD domain, G-beta repeat 169 199 IPR001680 GO:0005515
Car05g01762 326 Pfam WD domain, G-beta repeat 284 319 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01762 Car-Chr5 62731789 62733062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01762 70 320 Acyl Lipid Metabolism Gene Families AT3G18860 26.374 6.54e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01762 - - gmx:100815608 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01762 05 62731789 62733062 Car05g01762 05 62731789 62733062 ECH
Car07g01011 07 8962424 8963755 Car05g01762 05 62731789 62733062 PCT