Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00547 ATGGCCATTGCAAAGAGTGGTGTTATTATTATTTTACTCTTTGCATTGGCCAGTTATGCAGATGCTGCTGCTGCTGTAAGAGCAAGGCCACCTGTTGGTCATGATGTATTTGGGGATAAAAATAATGCTAAGGATGTGCCCCTTCCTGGTGAGAAATTAGTTAATGTCTTGAGTTTTGGTGCCAAAGGTGATGGTGTCTTTGATTCCACTGAGGCTTTCATGCAGGCATGGCAAGCAGTTTGCCACACTGAAGGACAAAACCGATTGTATATTCCTGCTGGAAAGTTTTTGGTTTCTTCTATGTATTTTCAAGGACCTTGTCTTGCTCCAAATCCAGTAACAATTCAAGTTGAAGGAACTGTTTTGGCTACCACTGATATTTCTGAGTATGAAAACGGAGATTGGCTCATGTTTCAGAAAATCAATGGCCTAAAAATCATTGGTGGTGGTACTTTTGATGGACAGGGTCAAAAATCATGGGAATATACTGAGAATTGCGAAGCTAGCAACGAAGTTTGCGTCAGAAACCCCAGCAGTTTGTTTTTCATGGAGGTCCAAAATGCAATTGTACAGAACATTAGATCAGTGAATCCCAAAGGCTTTCATGTATTCATTACTAAATGTTCAAACATTAGGATGCGTAAACTTAAACTCATTGCACCTGAAACCAGCCCCAACACTGATGGAATTCATATCAGTAGCTCAGTCAATGTGATTATAGCAAGAAACTCTATTTCAACTGGTGATGATTGTATCTCTATGATACAAGGTTCTGAAAATATTTTCATCAATAGACTCAAGTGTGGACCTGGTCATGGTATCAGTATTGGTAGTCTTGGAAAGTACGAAAATGAGAGAGAGGTTAGAGGTGTTAGTATCAAGAACAGTGCATtgattggcacaaccaatggtctcagaataaaaacatggccagatagatatggtggtggAGCATCAATGATAAGTTTCAGTAACATTAACATGACAAATGTTAAAAATCCTATCATCATTGATCAGGAGTATGAATGTTACCCAAATTGCCAAAAGAAGCCATCATTGGTGAAAATCCAAGACATTCATTTTGCAAATGTAAAGGGAACAACAATATCACCAATTGCAGTGGATTTGAGATGCAGCAAGCTATATCCATGTTCGGGTGTTACAATTAGAGATATTGACCTAAAGTTTGGAAATGCCCCTTCAAGTGCTAGATGCGTTAATGTTAAGCCTGTCTATGGTGGTTTCTTAAACCCACCAGCTTGCATGTAA 1269 0.3704 MAIAKSGVIIILLFALASYADAAAAVRARPPVGHDVFGDKNNAKDVPLPGEKLVNVLSFGAKGDGVFDSTEAFMQAWQAVCHTEGQNRLYIPAGKFLVSSMYFQGPCLAPNPVTIQVEGTVLATTDISEYENGDWLMFQKINGLKIIGGGTFDGQGQKSWEYTENCEASNEVCVRNPSSLFFMEVQNAIVQNIRSVNPKGFHVFITKCSNIRMRKLKLIAPETSPNTDGIHISSSVNVIIARNSISTGDDCISMIQGSENIFINRLKCGPGHGISIGSLGKYENEREVRGVSIKNSALIGTTNGLRIKTWPDRYGGGASMISFSNINMTNVKNPIIIDQEYECYPNCQKKPSLVKIQDIHFANVKGTTISPIAVDLRCSKLYPCSGVTIRDIDLKFGNAPSSARCVNVKPVYGGFLNPPACM 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00547 422 Gene3D - 46 414 IPR012334 -
Car07g00547 422 PANTHER POLYGALACTURONASE 2 421 - -
Car07g00547 422 SUPERFAMILY Pectin lyase-like 47 422 IPR011050 -
Car07g00547 422 SMART pbh1 208 234 IPR006626 -
Car07g00547 422 SMART pbh1 235 256 IPR006626 -
Car07g00547 422 SMART pbh1 288 309 IPR006626 -
Car07g00547 422 SMART pbh1 384 410 IPR006626 -
Car07g00547 422 Pfam Glycosyl hydrolases family 28 81 409 IPR000743 GO:0004650|GO:0005975
Car07g00547 422 PANTHER - 2 421 - -
Car07g00547 422 ProSitePatterns Polygalacturonase active site. 265 278 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00547 Car-Chr7 4812110 4814205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00547 53 421 Glycoside Hydrolase AT4G18180 43.782 3.28e-106 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00547 K01213 - gmx:100800324 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00547 07 4812110 4814205 Car07g00547 07 4812110 4814205 ECH
Car07g00547 07 4812110 4814205 Car01g00988 01 9310782 9315293 PCT