Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00988 ATGGCAGTTGCAAAAGTATTTGTTGTTTTAATTTTGTGTTTTGCAATAGTTTATTATGTTGATGCTGGTCCAAGAAGAAGGCCAGTTGCTGGTCCTGATATCTACAAAGGTAAAAATGTAGCAAAAGATTCTCTTTCTCCTGGAGAGAAAGTTGTTAATGTCATGAGCTTTGGAGCAAAACCTGATGGAAAATTTGACTGCACTCAGGCTTTCATGGATGGATGGAGAGCAGCCTGCAAGTCCAATGTTCAAGCAAGGCTTCTAATCCCTCAAGGCAGATTCCTTGTTTCTTCAATGTTCTTTGCAGGCCCATGTCTCACTCCAGAGCCCATAACAATCCAAGTTGTAGGCACAGTTGTGGCAACAACAGATATTAGTGAGTATGAGAATGGTGAATGGCTCATGTTTGAAGACATAGCTGGTATTAAACTTATTGGTGGAGGTACTTTTGATGGTCAAGGTAAATCTGCATGGGAGTTTCATCAAGATTGTGAATCTGACCCAACCAATACATGTGTTAGGTCCCCTAGTAGCCTTTATTTTAATAAAGTGACCAATGGAGTTATACAGAACATCAAATCTGTTGATCCAAAAGGGTTTCACATATTTGTGACTAATTCTGCAAACATTAGACTTCGATTGCTTAAGCTGAGTGCACCAGCTACCAGCCCTAATACTGATGGTCTTCATATAAGCCATTCAACAAATGTGAAAATATCAAAAAGTAGTGTTGAAACTGGGGATGATTGTGTCTCCATGATACAAGCTGTCTCCAATGTTACCATCAATAGACTCAAGTGTGGTCCAGGACATGGTATAAGTATTGGAAGTCTTGGAAAGTATCCGGATGAGCAAGAGGTGAATGGAGTTAGAGTCAAGAGCTGCACATTAACTGGCACAACCAATGGCCTAAGATTTAAAGCATGGCCAGATAAGTATCCAGGTGCAGCATCAGATATCAGTTTCACTGACATTACAATGGAAAATGTTAAAAATCCTATCATCATTGATCAAGAATATCAATGCTCTCCAAATTGCAAAAAGAAGCCTTCACTTGTAAAGATAAAAGACGTTGCTTATACAAATATAAGTGGAACAACAACTTCTCAAATTGCAGTGGACATGAGGTGTAGCAAGCAATTCCCATGTCAAAATATTAAACTTCAAAACATAGACCTAAAGCTTGGACCCACCCCTGTTGGCTCTAGATGTGCCAACATCAAACCTATCTATGTTGGCATACAAAGACCACCAGCTTGCCCATAA 1266 0.3949 MAVAKVFVVLILCFAIVYYVDAGPRRRPVAGPDIYKGKNVAKDSLSPGEKVVNVMSFGAKPDGKFDCTQAFMDGWRAACKSNVQARLLIPQGRFLVSSMFFAGPCLTPEPITIQVVGTVVATTDISEYENGEWLMFEDIAGIKLIGGGTFDGQGKSAWEFHQDCESDPTNTCVRSPSSLYFNKVTNGVIQNIKSVDPKGFHIFVTNSANIRLRLLKLSAPATSPNTDGLHISHSTNVKISKSSVETGDDCVSMIQAVSNVTINRLKCGPGHGISIGSLGKYPDEQEVNGVRVKSCTLTGTTNGLRFKAWPDKYPGAASDISFTDITMENVKNPIIIDQEYQCSPNCKKKPSLVKIKDVAYTNISGTTTSQIAVDMRCSKQFPCQNIKLQNIDLKLGPTPVGSRCANIKPIYVGIQRPPACP 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00988 421 Gene3D - 38 417 IPR012334 -
Car01g00988 421 SUPERFAMILY Pectin lyase-like 48 420 IPR011050 -
Car01g00988 421 PANTHER - 2 420 - -
Car01g00988 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Car01g00988 421 Pfam Glycosyl hydrolases family 28 79 408 IPR000743 GO:0004650|GO:0005975
Car01g00988 421 PANTHER POLYGALACTURONASE 2 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00988 Car-Chr1 9310782 9315293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00988 51 420 Glycoside Hydrolase AT4G18180 44.330 9.10e-110 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00988 K01213 - gmx:100782722 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00988 01 9310782 9315293 Car01g00988 01 9310782 9315293 ECH
Car07g00547 07 4812110 4814205 Car01g00988 01 9310782 9315293 PCT