Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00538 ATGCTAGTGGCATTGCTCTTGCTGGTGGCACTGAGCAATGAAGCAAGAGTACTGAATGGTGAAAGAGGTGATAGGCAGTGTGAGTTTAATCCAGCATTAAAGCCAAGACCTCATAGTGTCTCAATTTTGGAGTTTGGTGCAGTTGGTGATGGTAAAACATTGAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAATCATTTGCTGACAAAGGTGGTGCTCAACTATATGTACCCCCTGGAACATGGCTTACTCAGAGTTTCAATCTCACTAGCCATCTTACTCTCTTTCTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCTTATCAATGGGATGTTGTCGATCCATTACCTTCTTATGGCCGAGGACTTGAAGTTCCTGGTGGAAGATATCAGAGCTTGATAAATGGATACATGTTACATGATGTGGTCATAACAGGTAATAATGGAACCATTGATGGCATGGGATTGACTTGGTGGGAATCATTTAAATCTCATTCCTTGAACTATAGCCGTCCTCATCTGGTTGAATTTGTAGCATCTAATGATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCATATAACATTCACCCAGTTTATTGCAGGCATGTTCTCAATGTACATATTCATAATATTTCAATCTTTGCTCCTCCAGAATCTCCTTATACTGTTGGCATAGTACCAGATTCTTCTGATCATGTTTGCATAGAGGATTGTACGATTGCAACCGGCTACGATGCAATTTCTCTCAAAAGCGGCTGGGACGAATATGGAATTGCCTACGGCCGACCGACCGAGAATGTACACATCCAAAGGGTGCATCTACAAGCATCTTACGGTGCTACTCTTGCATTTGGTAGTGACATGTCTGGTGGCATTTCAAATGTTGTTGTAGAACATGTTTATCTCTACAACTCAAAAGGTGGCATCAATTTCAGAACAAGCAGAGGAAGAGGTGGTTATATGAAAGAAATCATTATAACAGACATAGTAATGAAGAATATCTACACAGCAATTTCTGCCACTGGTTACTGTGATTCTCATCCTGATGACAAATTTGATCCTAATGCTCTTCCACTTTTGGATCACTTTATTTTACAAGATATAATTGGAACAAACATCACTATTGCTGGAAGCTTTGCTGGAATACAAGAATCTCCATTCACAAACATATGCTTATCTAATATAACCTTGTCTGTAAATTATGCTTCCTCCACTACTTGGGAATGTTCAAATGTCTATGGATTTTCAGATTCTGTTCTCCCCAAACCATGTCCTGATCTTGACAGCCCTTCAAATTCTTCCTTATCTTGTCTCAACATGCTGAGTATCGTTGGAAAAACTGCGGTTTCCAGCTCGATGTCGATGAAAAAGTGA 1395 0.4 MLVALLLLVALSNEARVLNGERGDRQCEFNPALKPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVIIGSQDPYQWDVVDPLPSYGRGLEVPGGRYQSLINGYMLHDVVITGNNGTIDGMGLTWWESFKSHSLNYSRPHLVEFVASNDVVVSNLTFLNAPAYNIHPVYCRHVLNVHIHNISIFAPPESPYTVGIVPDSSDHVCIEDCTIATGYDAISLKSGWDEYGIAYGRPTENVHIQRVHLQASYGATLAFGSDMSGGISNVVVEHVYLYNSKGGINFRTSRGRGGYMKEIIITDIVMKNIYTAISATGYCDSHPDDKFDPNALPLLDHFILQDIIGTNITIAGSFAGIQESPFTNICLSNITLSVNYASSTTWECSNVYGFSDSVLPKPCPDLDSPSNSSLSCLNMLSIVGKTAVSSSMSMKK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00538 464 Gene3D - 27 424 IPR012334 -
Car07g00538 464 SUPERFAMILY Pectin lyase-like 33 433 IPR011050 -
Car07g00538 464 PANTHER PECTIN LYASE-RELATED 2 448 - -
Car07g00538 464 Pfam Pectate lyase superfamily protein 40 97 IPR024535 -
Car07g00538 464 SMART pbh1 210 236 IPR006626 -
Car07g00538 464 SMART pbh1 184 206 IPR006626 -
Car07g00538 464 SMART pbh1 328 349 IPR006626 -
Car07g00538 464 SMART pbh1 237 258 IPR006626 -
Car07g00538 464 SMART pbh1 299 320 IPR006626 -
Car07g00538 464 SMART pbh1 271 293 IPR006626 -
Car07g00538 464 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 2 448 - -
Car07g00538 464 Pfam Glycosyl hydrolases family 28 138 419 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00538 Car-Chr7 4744173 4747389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00538 32 440 Glycoside Hydrolase AT3G06770 65.281 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00538 - - gmx:100802343 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00538 07 4744173 4747389 Car07g00538 07 4744173 4747389 ECH
Car07g00538 07 4744173 4747389 Car01g00980 01 9138389 9141422 PCT