Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00980 ATGCTTGTGGCATTGCTCTTGCTTCTGGCATTGAGCAATGCCTTGATAGTTTATGGAGATGTTGAGCAGTGTGGTTTGAATCCAAAATTGGATCCTAGACCACACAGTGTCTCAATTTTGGAGTTTGGTGCAGTTGGAGATGGTAAAACATTGAATACAATTGCATTCCAAAATGCAATTTTCTATCTCAAGTCATTTGCTGATAAAGGTGGTGCTCAGCTCTATTTGCCACCAGGACAATGGCTCACTGGTAGTTTCAATCTTACCAGCCATCTTACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCACTGGGATGTTATTGAACCTTTACCGTCTTACGGCCGAGGGAAAGACGTTCCTGAAGGAAGACATAAGAGCTTGATAAATGGTTACAAGTTGGAAGATGTGGTCATAACAGGCAATAATGGAACCATTGATGGCATGGGAATGATTTGGTGGGATTTGTATAACTCTCATTCCCTTAACCATAGTCGTCCTCATTTGGTTGAAATTATATCATCTAATTTTGTGGTTGTTTCAAATCTTACATTCTTGAATGCTCCAGCATATAGCATCCACCCAGTTTATTGCAGCAATGTACATATTCAAAACATTTCAATCTCTACTCCTCCCGATTCCCCTTATACTGTTGGTATAGTACCAGATTCTTCTGATAATGTTTGTATAGAAGATTGTATTGTTTCAATGGGATTTGATGCAATATCTCTAAAAAGTGGTTGGGATGAGTATGGACTTACCTATGGAAGACCAACTGAGAAAGTACACATCAGAAGGGTTCATCTCCATGCATTTTCCGGCTCAGCTCTTTCGTTCGGTAGCGAAATGTCTGGTGGCATTTCAAATGTTCTTGTGGAACATGTTAAAATTTTCAACTCAAATAGTGGAATTGAATTCAGAACCACCAAAGGAAGAGGTGGTTATATAAAAGAAATTGCCATATCAAACATTGAAATGGAGAATGTGTATACAGCAATTGGTGCTAAAGGTGATTGTGGCTCTCATCCTGATGACAAATTTGATCCAAAAGCTTTTCCACTTTTGAATCACATTACTTTGAAGGATATTATTGGCAAAAATATCACAATTGCTGGAAGTTTTGAAGGGATAAAAGAATCTCCTTTCACAAACATTTGCCTTTCAAATGTAACATTGTCTACAAATAATGTTTCTCCAATTACATGGGAATGTTCAAATGTGTCAGGATTCTCAGACTCAGTGTTACCTGAACCTTGTCAAGAACTTCATAACGCCtcatattcttcatcttcatcatcatcatGTTTCTACTTGATGAGTCTCGGTCGAAAAACTGCAGGGTTTTAA 1365 0.3758 MLVALLLLLALSNALIVYGDVEQCGLNPKLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYLPPGQWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWDVIEPLPSYGRGKDVPEGRHKSLINGYKLEDVVITGNNGTIDGMGMIWWDLYNSHSLNHSRPHLVEIISSNFVVVSNLTFLNAPAYSIHPVYCSNVHIQNISISTPPDSPYTVGIVPDSSDNVCIEDCIVSMGFDAISLKSGWDEYGLTYGRPTEKVHIRRVHLHAFSGSALSFGSEMSGGISNVLVEHVKIFNSNSGIEFRTTKGRGGYIKEIAISNIEMENVYTAIGAKGDCGSHPDDKFDPKAFPLLNHITLKDIIGKNITIAGSFEGIKESPFTNICLSNVTLSTNNVSPITWECSNVSGFSDSVLPEPCQELHNASYSSSSSSSCFYLMSLGRKTAGF 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00980 454 Gene3D - 27 419 IPR012334 -
Car01g00980 454 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 447 - -
Car01g00980 454 SUPERFAMILY Pectin lyase-like 32 429 IPR011050 -
Car01g00980 454 PANTHER PECTIN LYASE-RELATED 2 447 - -
Car01g00980 454 Pfam Glycosyl hydrolases family 28 130 414 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00980 Car-Chr1 9138389 9141422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00980 1 442 Glycoside Hydrolase AT3G16850 62.980 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00980 - - gmx:100806574 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00980 01 9138389 9141422 Car01g00980 01 9138389 9141422 ECH
Car07g00538 07 4744173 4747389 Car01g00980 01 9138389 9141422 PCT