Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00384 ATGATGGTGGAAACCTCAACGCTAGGTCGGTTCCACCACCAAAGACTCGACTTTAAGCGATGGGTTCCTTCATTCTTAACCTCACATAAGACCCTTTTCATGGTTTTATGGATCGCTGCATTTTTATCGGTTTTTATGTGGCAAAGGAACATGGTGGTTGGTGGGTTTTTGGTTTTCGGTCAAGTTCCGGTTAGACCGATTCCGAAGCTGAGACCGGTGGTTTTCAATTTGACGGATTTTGGAGGAGTGGGTGATGGGGTTACTCTTAACACTGAGGCTTTTGAGAGAGCTGTTTCTGCTATATCTAAATTGGGGAAGAAAGGTGGAGCCCAGCTGAATGTTCCTCCTGGTCGTTGGCTCACTGCACCCTTTAATCTTACCAGTCATATTACTCTGTTTCTAGCTGAAGATTCTGTTATTCTCGGCATTGATGATGAGAAGTATTGGACACTAATGCCTCCATTGCCTTCGTATGGGTACGGAAGGGAGCGTCCTGGGCCTCGATATGGAAGTTTGATTCATGGTCAGAATCTTAAAGATGTTGTGATAACAGGGCATAATGGCACTATAAATGGCCAAGGACAATCATGGTGGAAAAAATATCGCCAAAAGCGTCTCAACTACACAAGAGGCCCACTTGTTCAGATCATGTGGTCTAGTGACATTTTAATCACAAATATTACTCTACGCGATTCTCCATTTTGGACACTCCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTTACAATTTTGGCTCCTGTATTTGAAGCTCCAAACACTGACGGCATAGATCCTGACTCTTGCGAGGATATGTTGATAGAAGATTGTTACATAAGTGTGGGTGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAATATGGAATTGCTTATGGAAGACCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGTATCTCAATAGGTAGTGAGATGTCTGGCGGCGTATCCAATGTCACTGTGGAGAATATTCTTATATGGAATTCTAGGCGTGGTGTGAGGATAAAGACTGCAGCCGGGCGGGGCGGATATGTGCGGCAAATAACTTATCGGAATCTAACATTTGAGAATGTCCGTGTTGGAATTGTGATGAAAACAGATTACAATGAACACGCTGATGATGGATACGACCCTACCGCACTTCCCGACATAAGAGACATAAACTTCATCAATATCCACGGCCATGGAGTTCGTGTGCCGGTACGTATTCATGGTAGCGAAGAGATTCCTGTGAAAAATGTAACTTTTCGTGACATGTCAGTTGGGTTAACCTACAAGAAGAAACACATCTTTCAGTGTGCATTTGTACAAGGCCGCGTGATTGGGACCATCTTTCCGTCTCCGTGCGAGAACCTTGATCGGTACAATGAGCATGGACAGTTGGTTAAACAATCCATGTCACAGAATGTAACAGATATAGATTATGATTTTTGA 1482 0.4318 MMVETSTLGRFHHQRLDFKRWVPSFLTSHKTLFMVLWIAAFLSVFMWQRNMVVGGFLVFGQVPVRPIPKLRPVVFNLTDFGGVGDGVTLNTEAFERAVSAISKLGKKGGAQLNVPPGRWLTAPFNLTSHITLFLAEDSVILGIDDEKYWTLMPPLPSYGYGRERPGPRYGSLIHGQNLKDVVITGHNGTINGQGQSWWKKYRQKRLNYTRGPLVQIMWSSDILITNITLRDSPFWTLHPYDCKNITIKGVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGVSNVTVENILIWNSRRGVRIKTAAGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHADDGYDPTALPDIRDINFINIHGHGVRVPVRIHGSEEIPVKNVTFRDMSVGLTYKKKHIFQCAFVQGRVIGTIFPSPCENLDRYNEHGQLVKQSMSQNVTDIDYDF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00384 493 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 22 491 - -
Car07g00384 493 PANTHER PECTIN LYASE-RELATED 22 491 - -
Car07g00384 493 Pfam Glycosyl hydrolases family 28 170 452 IPR000743 GO:0004650|GO:0005975
Car07g00384 493 Gene3D - 63 455 IPR012334 -
Car07g00384 493 SUPERFAMILY Pectin lyase-like 66 466 IPR011050 -
Car07g00384 493 SMART pbh1 304 326 IPR006626 -
Car07g00384 493 SMART pbh1 395 417 IPR006626 -
Car07g00384 493 SMART pbh1 422 443 IPR006626 -
Car07g00384 493 SMART pbh1 270 291 IPR006626 -
Car07g00384 493 SMART pbh1 361 382 IPR006626 -
Car07g00384 493 SMART pbh1 332 353 IPR006626 -
Car07g00384 493 SMART pbh1 242 269 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00384 Car-Chr7 3374351 3378720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00384 10 492 Glycoside Hydrolase AT1G19170 76.768 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00384 - - gmx:100818529 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00384 07 3374351 3378720 Car07g00384 07 3374351 3378720 ECH
Car07g00384 07 3374351 3378720 Car01g01273 01 16856462 16869175 PCT