Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01273 ATGGTGGTGTTTCAAACATCAACACCCTTTTCCTCTCATCACAAGAGTACTAGTTTCTTCTTTGTGTTTCTTTGTGTTGCAGCGCTTGGTTCTGTTTTTTTGGTGTGGCAAAGGAATGTGATTAATGGCTTCTTTGTCTTGGGTGGTGGTGTTCCTGTTTGGGAATCACCTAAACTGAGGCCTGTGGTTTTCGATTTGATTGATTTTGGTGGGGTTGGTGATGGTGTTACTCTAAATACTAAGGCTTTTGAAAGCGCTATTTCTGTTATCTCTAAATTTGGGAACAAGGGTGGTGCTCAGTTGAATGTGCCACCTGGTCTTTGGCTTACTTCTCCCTTTAATCTCACTAGTCATATCACTCTTTTTCTAGCTCAGGATGCTGTTATTCTTGGAATTCAGGACGAAAATTATTGGCCATTGATGCCTGCATTGCCTTCATATGGGTATGGTAGGGAGCATCCTGGTCCGCGGTATAGCAGTTTGATTCACGGTCAAAATCTTACAGATGTTGTGATAACAGGGCATAATGGTACGATAAATGGACAGGGACTCACATGGTGGACAAAATATCGCCAAAAGCTTCTCAACCACACAAGAGGGCCACTTGTTCAGATCATGTGGTCTACTGACATTGTGATCTCTAACATTACTCTGCGTGACTCTCCGTTTTGGACTCTTCATCCATATGACTGCAAGAATGTTACAATAAAAAACGTTACGATACTGGCTCCTGTGTATCATGCTCCAAATACTGACGGCATAGATCCTGGCAAGTATATTTTTATAATATATGATCTTCTGGTTGTTTCTATATCCAATTCTTGTGAAGATATGTTGATAGAGGATTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAATATGGAATTGCTTATGGAAAGCCTTCTAAGAATATAGTAATCCGAAACCTCGTTGTTCGATCTAACGTCAGTGCGGGAATCTCAATAGGCAGCGAGATGTCGGGCGGGGTATCCAATGTCACCATCGAGAACATTCTCGTATGGGAATCTAGACGCGCCATCAGGATCAAGACTGCTCCCGGAAGAGGTGGATATGTGCGCCAAATAGCTTACCGGAATCTAACTTTCAACAACGTCCGTGTTGGAATTGTTATCAAGACCGATTACAACGAACACCCTGATGCTGGATACGACCCTAAAGCGCTTCCAATTCTCAGAGACATAAGCTTCACCCATATCCGCGGTGAGGGGGTTCGCGTACCGGTACGTATTGAAGGTAGCGAAGAGATTCCGATTAGAAACGTGACTTTCCAGGATATGAACGTCGGGATAACGTACAAAAAGAAGCATATTTTTCAGTGTGCCTTTGTGGATGGTCAGGTAATAGGGACCATCTTTCCAAAACCATGTGAAAATTTTGATCAGTACAATGAACAAAGAGAGCTGGTTAAGCATGCTATGTCACAGAATGTAACAGATATTGATTATGAAATTTGA 1497 0.4235 MVVFQTSTPFSSHHKSTSFFFVFLCVAALGSVFLVWQRNVINGFFVLGGGVPVWESPKLRPVVFDLIDFGGVGDGVTLNTKAFESAISVISKFGNKGGAQLNVPPGLWLTSPFNLTSHITLFLAQDAVILGIQDENYWPLMPALPSYGYGREHPGPRYSSLIHGQNLTDVVITGHNGTINGQGLTWWTKYRQKLLNHTRGPLVQIMWSTDIVISNITLRDSPFWTLHPYDCKNVTIKNVTILAPVYHAPNTDGIDPGKYIFIIYDLLVVSISNSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVTIENILVWESRRAIRIKTAPGRGGYVRQIAYRNLTFNNVRVGIVIKTDYNEHPDAGYDPKALPILRDISFTHIRGEGVRVPVRIEGSEEIPIRNVTFQDMNVGITYKKKHIFQCAFVDGQVIGTIFPKPCENFDQYNEQRELVKHAMSQNVTDIDYEI 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01273 498 SMART pbh1 275 296 IPR006626 -
Car01g01273 498 SMART pbh1 231 258 IPR006626 -
Car01g01273 498 SMART pbh1 337 358 IPR006626 -
Car01g01273 498 SMART pbh1 366 387 IPR006626 -
Car01g01273 498 SMART pbh1 309 331 IPR006626 -
Car01g01273 498 SMART pbh1 427 448 IPR006626 -
Car01g01273 498 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 14 496 - -
Car01g01273 498 Pfam Glycosyl hydrolases family 28 159 457 IPR000743 GO:0004650|GO:0005975
Car01g01273 498 Gene3D - 51 460 IPR012334 -
Car01g01273 498 PANTHER PECTIN LYASE-RELATED 14 496 - -
Car01g01273 498 SUPERFAMILY Pectin lyase-like 55 471 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01273 Car-Chr1 16856462 16869175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01273 10 498 Glycoside Hydrolase AT3G42950 68.119 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01273 - - gmx:100791187 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01273 01 16856462 16869175 Car01g01273 01 16856462 16869175 ECH
Car07g00384 07 3374351 3378720 Car01g01273 01 16856462 16869175 PCT