LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g00315	ATGTTAAGTAAGATACTTCTTGGCTTTCTCTTAATAGCCTTTTTGGTAGAAGCAACATTTGCAAGTAACTTTTACCAAGATTTTAACATAAAATGGGGTGATGGTCGTGGCAAAATCTTTAACAATGGAAAACTTTTGACTCTGTCTTTGGACAAAGCTTCTGGCTCTGGATTTCAATCCAAAAGTCAATACTTGTTTGGAAAAATTGACATGCAAATTAAACTTGTTCCTGGTAACTCTGCAGGCACAGTCACAACCTATTATTTATCTTCTCTTGGTGATGCTCATGATGAAATAGATTTTGAATTTCTGGGAAACTTAAGTGGTGATCCTTATATTGTTCATACAAATATTTACACACTAGGGAAAGGGAATAGAGAACAACAATTCTATTTATGGTTCGACCCCACCAAGGACTTTCACACTTATTCCATTCTCTGGAATCCTCTAAGCATCATATATTATGTGGATGGGACCCCAATAAGGGAGTTCAAGAATTTGGAATCAAAAGGTATTCCTTTTCCAAGTAGCCAAGCAATGAGTATATATTCAAGTCTTTGGGATGCTGATAATTGGGCCACAAGGGGTGGCCTAGTGAAAACAGATTGGGCCAAAGCCCCATTCACTGCTTCATATAGCAATTTCAACATCCAAGCTTGTGTTTGGACTTCTTCTTCAGGTTCCTCTTGCTCTTCCAAAAATCCATCTTCAAACCAATCATGGTTGAAACAATCCCTTGATTCTACGGGGCAAGCTAGGATTCGATGGGTGCAAAAACACTACATGATTTATAATTATTGCACTGATACTAAAAGATTTCCTCAAGGACTCCCTCCTGAATGCCCTCTTGAATGA	855	0.3801	MLSKILLGFLLIAFLVEATFASNFYQDFNIKWGDGRGKIFNNGKLLTLSLDKASGSGFQSKSQYLFGKIDMQIKLVPGNSAGTVTTYYLSSLGDAHDEIDFEFLGNLSGDPYIVHTNIYTLGKGNREQQFYLWFDPTKDFHTYSILWNPLSIIYYVDGTPIREFKNLESKGIPFPSSQAMSIYSSLWDADNWATRGGLVKTDWAKAPFTASYSNFNIQACVWTSSSGSSCSSKNPSSNQSWLKQSLDSTGQARIRWVQKHYMIYNYCTDTKRFPQGLPPECPLE	284

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g00315	284	SUPERFAMILY	Concanavalin A-like lectins/glucanases	24	282	IPR013320	-
	Car07g00315	284	Pfam	Glycosyl hydrolases family 16	25	205	IPR000757	GO:0004553\|GO:0005975
	Car07g00315	284	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	9	282	IPR044791	GO:0004553
	Car07g00315	284	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	98	108	IPR008263	GO:0004553\|GO:0005975
	Car07g00315	284	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	18	212	IPR000757	GO:0004553\|GO:0005975
	Car07g00315	284	Gene3D	-	11	284	-	-
	Car07g00315	284	CDD	GH16_XET	21	281	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Car07g00315	284	PIRSF	EndGlu_transf	1	284	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Car07g00315	284	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	9	282	-	-
	Car07g00315	284	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	237	281	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Car07g00315	284	PRINTS	Glycosyl hydrolase family 16 signature	56	74	IPR008264	GO:0004553\|GO:0005975
	Car07g00315	284	PRINTS	Glycosyl hydrolase family 16 signature	114	127	IPR008264	GO:0004553\|GO:0005975
	Car07g00315	284	PRINTS	Glycosyl hydrolase family 16 signature	132	149	IPR008264	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g00315	Car-Chr7	2865941	2868101	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g00315	1	281	Glycoside Hydrolase	AT4G25810	68.327	2.72e-143	402

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g00315	K14504		-	gmx:100807063	471.855

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car07g00315	07	2865941	2868101	Car01g01182	01	14079498	14081826	PCT