LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car01g01182	ATGAAAATGAAAAGTTCTATTGGTTTTCTCCTCCTATATGTAACCACTTTATTAGTGATTGCATCCGCAGGTAACTTTTACCAAGACATGGAAATAACATGGGGTGATAATCGTGCTAAGATCCTTGAAAATGGACAATTTCTTAGCCTCTCTTTAGACAAAGCCTCTGGCTCTGGATTTCGTTCAAAAAATGAATACTTGTTTGGAAAAATTGATATGCAACTCAAACTTGTGCCTGGTAACTCTGCTGGCACCGTTACAACCTATTATCTATCTTCTCAAGGGTCTACACATGACGAAATAGACTTTGAATTTCTTGGTAACTTAAGTGGTGATCCATATATTCTTCATACAAATGTATTCACACAAGGGAAAGGGAATAGAGAACAACAATTTTATTTGTGGTTCGACCCCACCAAGGATTTCCACACATATTCCATTCTTTGGAATCCTCAAAGCATCATATTCTCTGTGGATGGAACACCAATAAGGGAGTTCAAGAATTTAGAATCAAAAGGGGTTGGTTATCCAAAGAACCAAGCAATGAGGATATACTCTAGTCTTTGGAATGCTGATGATTGGGCCACAAGAGGTGGGCTTGTGAAAACGGATTGGGCCCAAGCCCCATTCACTGCCTCATATAGAAACTTCAACGCACAAGCTTGTGTTTGGACTTCTTCAGGCTCTTCTTGTTCTTCCAACAAATCACCAACATCATCATCAGCCCAATCATGGTTGAGAGAGTCACTTGACTCAAATGGGATAGCCAAAATTCATTGGGTCCAAAAGAATTACATGATTTACAATTATTGCACTGATACTAAACGTTTCCCACAAGGTTTCCCTTCTGAATGTCTTGCTTGA	864	0.3912	MKMKSSIGFLLLYVTTLLVIASAGNFYQDMEITWGDNRAKILENGQFLSLSLDKASGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTTYYLSSQGSTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSILWNPQSIIFSVDGTPIREFKNLESKGVGYPKNQAMRIYSSLWNADDWATRGGLVKTDWAQAPFTASYRNFNAQACVWTSSGSSCSSNKSPTSSSAQSWLRESLDSNGIAKIHWVQKNYMIYNYCTDTKRFPQGFPSECLA	287

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car01g01182	287	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	20	214	IPR000757	GO:0004553\|GO:0005975
	Car01g01182	287	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	10	286	-	-
	Car01g01182	287	SUPERFAMILY	Concanavalin A-like lectins/glucanases	28	286	IPR013320	-
	Car01g01182	287	Gene3D	-	13	287	-	-
	Car01g01182	287	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	100	110	IPR008263	GO:0004553\|GO:0005975
	Car01g01182	287	Pfam	Glycosyl hydrolases family 16	28	206	IPR000757	GO:0004553\|GO:0005975
	Car01g01182	287	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	241	285	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Car01g01182	287	PRINTS	Glycosyl hydrolase family 16 signature	58	76	IPR008264	GO:0004553\|GO:0005975
	Car01g01182	287	PRINTS	Glycosyl hydrolase family 16 signature	116	129	IPR008264	GO:0004553\|GO:0005975
	Car01g01182	287	PRINTS	Glycosyl hydrolase family 16 signature	134	151	IPR008264	GO:0004553\|GO:0005975
	Car01g01182	287	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	10	286	IPR044791	GO:0004553
	Car01g01182	287	PIRSF	EndGlu_transf	1	287	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Car01g01182	287	CDD	GH16_XET	21	285	IPR016455	GO:0010411\|GO:0016762\|GO:0042546

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car01g01182	Car-Chr1	14079498	14081826	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car01g01182	1	287	Glycoside Hydrolase	AT4G25810	69.686	2.40e-151	423

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car01g01182	K14504		K08235	gmx:100807063	483.026

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car07g00315	07	2865941	2868101	Car01g01182	01	14079498	14081826	PCT