Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00293 ATGGCCACGGCGGAGCCAATTCAGAACGGAACTTTATTATCACAACCACTCTCCGATACAATTTCCGACGCCGCCGTCAACACCACGACGGAGGAACCAGATTCCACAGAGAAGAGATGGCCTGGTTGGCCTGGTCACTGCGTTTTCCGACTAATCGTGCCGGTTGTCAAAGTTGGTATCATCATCGGACGCAAAGGGGAACTCATCAAAAAGACTTGCGAAGAAACTCGTGCTCGCATTCGTGTTCTTGATGCTCCAATCGGAACAGCTGATCGAGTCGTACTTGTATCGGGGAAGGAAGATCCGGAGGCACCTCTTTCCCCTGCAATGGATGCTGTAATAAGGGTATTCAAACGTGTTTCCGGGTTATCTGAAACTGATGATGACAGTAATAAAACATTAGGAGCTGCAGGGGCTGCATTTTGTTCCATTCGTTTATTGGTGGCCTCAACGCAAGCTATCAATCTGATAGGAAAGCAGGGCTCATCGATTAAATCTATACAGGAAAACACTGGTGCTACTGTTAGAGTATTGTCTGGAGACGAGCTTCCATCTTATGCTGGTGCCGATGAGAGGATTGTGGAACTGCAGGGAGAAACCTTGAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTATTCCCCTATTTGAGAAGACTTGCAATGCAACAGTCTCCCAAGACCGGCAGACAGATGCCTGGGCTGACAAACCATCAATGCATAGTGCTTCACAACCTAGCAGTGTTGCTGATATTCCCCTTACAACCAAAAGGGATTCTTTCTTTGCTGATCGTGAAAGCCAATTGGATTCATTGCTCTCTTCCTCGACAATGTCACTATATGGACAAGATTCTTCAATTTCTGGTCTTCGTTCTTCCGCATTTAATCGTGGCAGTGCTTCCATTGTTACTACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGACATAATTGGTATTCAAGGGACTAATATTGATTACATTCGTCGCACTAGTGGAGCCATATTGACTGTCCAGGAGAGCAGGGTACCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAAGTTCAAACAGCACAACAATTGATTCAGGAAGTTATAAGCAATCACAACGAAGCTATGGCTACTAGTTACAGCAGGTTAGATACAGGTCTGAGATCTTCTTACTCTCAATTGGGCAGTTCATCCTATCCCTCGTCTTCCTTGGCCTCACAACCCTACAATGGGTATGGATCTTCCGGTCTAGGGGACTATAGTACTTTCAGACTTTAA 1317 0.4548 MATAEPIQNGTLLSQPLSDTISDAAVNTTTEEPDSTEKRWPGWPGHCVFRLIVPVVKVGIIIGRKGELIKKTCEETRARIRVLDAPIGTADRVVLVSGKEDPEAPLSPAMDAVIRVFKRVSGLSETDDDSNKTLGAAGAAFCSIRLLVASTQAINLIGKQGSSIKSIQENTGATVRVLSGDELPSYAGADERIVELQGETLKVLKALEAVVGHLRKFLVDHSVIPLFEKTCNATVSQDRQTDAWADKPSMHSASQPSSVADIPLTTKRDSFFADRESQLDSLLSSSTMSLYGQDSSISGLRSSAFNRGSASIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHNEAMATSYSRLDTGLRSSYSQLGSSSYPSSSLASQPYNGYGSSGLGDYSTFRL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00293 438 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 34 426 - -
Car07g00293 438 Gene3D K Homology domain, type 1 313 389 IPR036612 GO:0003723
Car07g00293 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 39 101 IPR036612 GO:0003723
Car07g00293 438 ProSiteProfiles Type-1 KH domain profile. 46 113 - -
Car07g00293 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 139 225 IPR036612 GO:0003723
Car07g00293 438 CDD KH-I 317 379 - -
Car07g00293 438 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 34 426 - -
Car07g00293 438 CDD PCBP_like_KH 48 117 - -
Car07g00293 438 ProSiteProfiles Type-1 KH domain profile. 315 378 - -
Car07g00293 438 ProSiteProfiles Type-1 KH domain profile. 141 210 - -
Car07g00293 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 309 384 IPR036612 GO:0003723
Car07g00293 438 CDD PCBP_like_KH 143 211 - -
Car07g00293 438 Gene3D - 46 218 - -
Car07g00293 438 SMART kh_6 140 215 IPR004087 GO:0003676
Car07g00293 438 SMART kh_6 314 383 IPR004087 GO:0003676
Car07g00293 438 SMART kh_6 45 118 IPR004087 GO:0003676
Car07g00293 438 MobiDBLite consensus disorder prediction 239 259 - -
Car07g00293 438 Pfam KH domain 318 380 IPR004088 GO:0003723
Car07g00293 438 Pfam KH domain 144 210 IPR004088 GO:0003723
Car07g00293 438 Pfam KH domain 49 101 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00293 Car-Chr7 2658772 2662376 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00293 K21444 - gmx:100807645 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00293 07 2658772 2662376 Car01g01153 01 11915340 11925707 PCT