Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01153 ATGGCCACCGCTGAACTACCTCAAAACGGcaccaccaccaccactacaaacaccTCAAACCCACTCCTACCGGACAATTCCACCGCCGTTCAACCACTCACCACCGACGCAGATTCCGTTAACACCGCCCAAGCCACCAATGAATTGACTCAGGAGCCAGAAACGGCAACCCACACCGGAACAGATACCAATTCCACCGCCGCAGTATCTACCGCAACTCCGCCGGAGAAGAAATGGCCAGGTTGGCCTGGAGACTGCGTGTTCCGTCTCGTAGTTCCTGTTAGTAAGGTTGGTAGCATCATTGGTCGAAAGGGCGAACTCATCAAGAAGTTGTGTGATGAAACTAAAGCTCGTGTTCGCGTTCTTGATGCTCCTATTGGTACTCCTGATCGAATTGTACTTATATCAGGGAAGGAAGAGCCAGAGGCAGCTATTTCCCCTGCAATGGATGCTGCACTAAGGATATTCAAACGGGTATCTGGACTATCCGAAACTGACAGTGAGTTTAAAGGATCTGCTGGGACATTTTGTTCCTTCCGATTATTGGTGGCATCAACACAGGCTATCAGTTTGATTGGAAAGCAAGGATCACTAATCAAATCCATACAGGAGAGTTCTGGTGCTTCTGTTAGAGTATTGTCAGGAGATGAGGTGCAACGATATGCTACTGCGGAAGAGAGGATTGTAGACATGCAGGGAGAAGCCTTGAAGGTCCTTAAAGCTTTCGAAGTCGTGATTGGCCATCTTAGGAAGTTTTTGGTTGACCGCAGCGTTCTTCCCCAATTTGAGAAAACTTACAATGCGTCTATTTCATCACAAGACCGTCAAGCAGAGACCTGGTCTGACAAGCCATCATTGAATACTACTTCACAAAATAGCATGTTCTCTGATAGGGACTCTATCTTTGCTGATCGTGAAAGTCATTTGGACTCATTACTTGCATCTTCCACTATGTCTCACTCTCTCTATGGGCAAGATTCTTCACTTTCTGGTCGTCGTTCTTCATCTCTTAGTCGTGCTGGCGCTCCCATTGTTACTACAGAAGTTATAAGGAATCACAGAGAATCTATGACCAACAGCTACGGGAGATTGGATGCGGGTGTGAGGGCTTCATATTCGCAGTCATCATACTCTCAATTGGGGAATACATCACGCATCCCACCTTCTTCATTGTCCTCACAACCACCATACACAGGTTATGGAGTGTCAGGTTTAGAAGATTATAGTACTTTCAGGCTTTAA 1242 0.4557 MATAELPQNGTTTTTTNTSNPLLPDNSTAVQPLTTDADSVNTAQATNELTQEPETATHTGTDTNSTAAVSTATPPEKKWPGWPGDCVFRLVVPVSKVGSIIGRKGELIKKLCDETKARVRVLDAPIGTPDRIVLISGKEEPEAAISPAMDAALRIFKRVSGLSETDSEFKGSAGTFCSFRLLVASTQAISLIGKQGSLIKSIQESSGASVRVLSGDEVQRYATAEERIVDMQGEALKVLKAFEVVIGHLRKFLVDRSVLPQFEKTYNASISSQDRQAETWSDKPSLNTTSQNSMFSDRDSIFADRESHLDSLLASSTMSHSLYGQDSSLSGRRSSSLSRAGAPIVTTEVIRNHRESMTNSYGRLDAGVRASYSQSSYSQLGNTSRIPPSSLSSQPPYTGYGVSGLEDYSTFRL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01153 413 MobiDBLite consensus disorder prediction 1 72 - -
Car01g01153 413 MobiDBLite consensus disorder prediction 378 399 - -
Car01g01153 413 Pfam KH domain 179 243 IPR004088 GO:0003723
Car01g01153 413 Pfam KH domain 88 143 IPR004088 GO:0003723
Car01g01153 413 CDD PCBP_like_KH 87 156 - -
Car01g01153 413 ProSiteProfiles Type-1 KH domain profile. 85 152 - -
Car01g01153 413 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 74 347 - -
Car01g01153 413 MobiDBLite consensus disorder prediction 273 293 - -
Car01g01153 413 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 74 347 - -
Car01g01153 413 SMART kh_6 175 250 IPR004087 GO:0003676
Car01g01153 413 SMART kh_6 84 157 IPR004087 GO:0003676
Car01g01153 413 CDD PCBP_like_KH 178 246 - -
Car01g01153 413 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 79 141 IPR036612 GO:0003723
Car01g01153 413 MobiDBLite consensus disorder prediction 1 78 - -
Car01g01153 413 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 171 261 IPR036612 GO:0003723
Car01g01153 413 ProSiteProfiles Type-1 KH domain profile. 176 245 - -
Car01g01153 413 Gene3D - 85 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01153 Car-Chr1 11915340 11925707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01153 K21444 - gmx:100815466 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00293 07 2658772 2662376 Car01g01153 01 11915340 11925707 PCT