Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g00278 | ATGGGTGTTTCTATGAGAGATTTGGATCCTGCATTGAAGGGAGCTGGACAAAAAGATGGACTTGAAATATGGCGAATTGAGAATTTTAATCCAGTTCCTATCCCTCAGTCTTCTTATGGAAAGTTTTTCACCGGAGATTCATATGTGATCTTGAAGACAACGGCATCAAAAAGTGGTGCTCTGCGCCATGACATTCATTATTGGCTTGGTAAAGACACCACTCAGGATGAAGCTGGTGTTGCAGCCATCAAAACAGTCGAATTGGATGCAGTTCTAGGAGGACGTGCTGTTCAGTATCGTGAAGTGCAGGGTCATGAAACGGAGAAGTTCCTGTCTTATTTCAAACCATGTATTATACCACAAGAAGGTGGAGCTGCCTCTGGTTTTAAGCATGTTGAAGCCGAAGAACATAAGACACGGTTGTTTGTATGCAAAGGGAAACATGTTGTAAATGTCAAAGAGGTTCCTTTTGCTCGATCTACGCTCAACCATGATGATATTTTTATTCTGGATACCGAGTCAAAAATCTTCCAATTTAATGGTTCCAACTCATCTATTCAAGAAAGGGCTAAAGCATTGGAAGTTGTACAATATATTAAGGATACTTACCATGATGGCAAATGTGAAGTGGCTTCTATTGAGGATGGAAAGCTGATGGCAGATTCTGAATCTGGAGAATTCTGGGGTTTGTTTGGTGGCTTTGCTCCTCTTCCACGAAAAACAGTCAGTGATGATGATAAGCCAGTTGCTTCTCATCCTCCAAAGTTGCTTTGTGTTGAAGATGGGAAGGAAAAGCCTATTGAAACTGATTCTTTGACAAAGGAATTACTGGATACCAACAAATGCTATATTTTAGATTGTGGGTTGGAGGTGTTTGTTTGGACGGGAAGAAACACATCCCTTGATGAAAGAAAAAGCGCAAGTGGAGCTTCAGATGAACTAGTCCGTAGCACCAATAGACCAAAATCCCAGATAATCCGCGTAATTGAAGGATTTGAGACAGTGATGTTCAGGTCCAAATTTGATTCTTGGCCTCAGACAACTAATGTAACAATGTCTGAAGATGGTCGTGGCAAGGTAGCAGCACTTCTTAAACGTCAAGGATTGGATGTCAAGGGCCTCTTGAAAGCTGATCCAGTAAAAGAAGAACCTCAACCCTACATAGATTGCACAGGACATTTACAGGTTTGGCGTGTGAATGGTCAAGAAAAGAATCTTCTTGCAGCCACTGACCAGTCAAAGTTTTATAGCGGAGATTGCTACATCTTTCAGTATTCATACCCTGGAGAAGATAGGGAGGAACATCTTATAGGAACATGGATTGGAAAGAACAGTGTTGAGGGAGAAAGAGCTTCAGCTCTTACACTAGCAAGAAAAATGGTTGAGTCGATGAAGTTTCTCCCATCCATGGCTCGTATTTATGAAGGCAGTGAACCAATTCAATTTCATTCCATTCTCCAAAGCTTTATTGTTTATAAGGGCGGACTTAGTGATGCATACAAGAATTACACCGCGGAGAAGGAAATTCCAGATGAGACTTACAGTGAGAACAGTGTTGCATTATTCCGCATCCAGGGCTCAGGACCAGAAAATATGCAAGCTATACAAGTTGACTCAATCGCATCCTCCTTGAATTCCTCTCATTGCTACATACTTCATAGTGAGTCCACTGTTTTTACTTGGTCTGGAAACCTTACAACTTCAGATGACCAGGAACTCGTTGAGAGAATGCTGGATTTGATAAAGCCGGATTTACAATGCAAACCACAAAGGGAAGGTGCAGAATCTGAACAGTTTTGGGAATTGTTAGGAGGAAAATCAGAATATCCCACTCAAAAGATTGCGAGGGATGGTGAAAATGATCCTCACCTATTTTCTTGCAATTTCTCAGAAGGAAATTTAAAGGTGACAGAGATACACAACTTTTCCCAGGATGATTTGATGACAGAAGATATCTTTGTCTTAGATTGTCACTCTGAAATCTTTGTATGGGTCGGCCAGCAGGTTGACCCGAAAAGTAGAATGCAGGCTCTACCAATTGGTGAGAAATTTCTTGAGAGTGATTTTCTTCTAGAAACATTATCTCATGTTGCTCCGATATATATTGTCATGGAAGGAAGTGAGCCGCCTTTCTTCACTCGCTTCTTTAAATGGGATTCTGCAAAATCTGCAATGCTGGGAAACTCATTTCAAAGAAAGCTTGCAATCATGAAAAATGGGGGCACTGCACCTTTGGTTAAACCCAAAAGAAGAGCATCTGTATCTTATGGGGGAAGGTCTAGTGGTCTGCCAGAGAAATCTCAGCGCTCCCGCAGTATGTCTGTTAGTCCTGACCGTGTTCGTGTGAGAGGAAGATCTCCAGCCTTCAATGCATTGGCAGCTACTTTCGAGAGCTCAAATGTTAGAAACCTTTCAACTCCACCCCCAATGATTAGAAAACTGTATCCAAAATCTATGACACCAGATTCAGCAACACTTGCACCTAAATCTTCAGCCATATCTAGCCTTACGTCCACTTTTGAACGACCATCAGCACGAGATAATTTGATTCCTCGGTCACTTAAAGGGAGTACAGATACCGCCAAATCGAACCCAGAGAGAAATAGCGACACGGAGAATTCTACAAGCAGCAGAGAAGAATCTAATACTATACAGGAAGATGGTGAAGCTGAAGATGTTGAAGATCTTCCAGTTTACCCATATGAACGTGTTAACACCGCTTCTACAGATCCTATGCCTGGCATTGACGTGACTAAACGAGAGGCTTATCTGTCACCTGATGAGTTCAAAGAGAGACTGAAGATGGCTAAGAATGAGTTTTACAAGTTGCCAAGATGGAAACAAAACAAACTCAAGATGGCTGTTCAGCTATTCTGA | 2877 | 0.4174 | MGVSMRDLDPALKGAGQKDGLEIWRIENFNPVPIPQSSYGKFFTGDSYVILKTTASKSGALRHDIHYWLGKDTTQDEAGVAAIKTVELDAVLGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGAASGFKHVEAEEHKTRLFVCKGKHVVNVKEVPFARSTLNHDDIFILDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHDGKCEVASIEDGKLMADSESGEFWGLFGGFAPLPRKTVSDDDKPVASHPPKLLCVEDGKEKPIETDSLTKELLDTNKCYILDCGLEVFVWTGRNTSLDERKSASGASDELVRSTNRPKSQIIRVIEGFETVMFRSKFDSWPQTTNVTMSEDGRGKVAALLKRQGLDVKGLLKADPVKEEPQPYIDCTGHLQVWRVNGQEKNLLAATDQSKFYSGDCYIFQYSYPGEDREEHLIGTWIGKNSVEGERASALTLARKMVESMKFLPSMARIYEGSEPIQFHSILQSFIVYKGGLSDAYKNYTAEKEIPDETYSENSVALFRIQGSGPENMQAIQVDSIASSLNSSHCYILHSESTVFTWSGNLTTSDDQELVERMLDLIKPDLQCKPQREGAESEQFWELLGGKSEYPTQKIARDGENDPHLFSCNFSEGNLKVTEIHNFSQDDLMTEDIFVLDCHSEIFVWVGQQVDPKSRMQALPIGEKFLESDFLLETLSHVAPIYIVMEGSEPPFFTRFFKWDSAKSAMLGNSFQRKLAIMKNGGTAPLVKPKRRASVSYGGRSSGLPEKSQRSRSMSVSPDRVRVRGRSPAFNALAATFESSNVRNLSTPPPMIRKLYPKSMTPDSATLAPKSSAISSLTSTFERPSARDNLIPRSLKGSTDTAKSNPERNSDTENSTSSREESNTIQEDGEAEDVEDLPVYPYERVNTASTDPMPGIDVTKREAYLSPDEFKERLKMAKNEFYKLPRWKQNKLKMAVQLF | 958 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g00278 | 958 | MobiDBLite | consensus disorder prediction | 851 | 881 | - | - | |
| Car07g00278 | 958 | Gene3D | Severin | 613 | 734 | IPR029006 | - | |
| Car07g00278 | 958 | Gene3D | Severin | 382 | 521 | IPR029006 | - | |
| Car07g00278 | 958 | SMART | VHP_1 | 923 | 958 | IPR003128 | GO:0003779|GO:0007010 | |
| Car07g00278 | 958 | Gene3D | Severin | 133 | 246 | IPR029006 | - | |
| Car07g00278 | 958 | PANTHER | VILLIN-4 | 1 | 958 | - | - | |
| Car07g00278 | 958 | CDD | gelsolin_S5_like | 517 | 608 | - | - | |
| Car07g00278 | 958 | SUPERFAMILY | Actin depolymerizing proteins | 129 | 244 | - | - | |
| Car07g00278 | 958 | SUPERFAMILY | VHP, Villin headpiece domain | 885 | 958 | IPR036886 | GO:0003779|GO:0007010 | |
| Car07g00278 | 958 | MobiDBLite | consensus disorder prediction | 760 | 775 | - | - | |
| Car07g00278 | 958 | PANTHER | VILLIN | 1 | 958 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | SUPERFAMILY | Actin depolymerizing proteins | 511 | 613 | - | - | |
| Car07g00278 | 958 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 255 | 427 | IPR036180 | - | |
| Car07g00278 | 958 | Pfam | Gelsolin repeat | 149 | 216 | IPR007123 | - | |
| Car07g00278 | 958 | Pfam | Gelsolin repeat | 269 | 337 | IPR007123 | - | |
| Car07g00278 | 958 | Pfam | Gelsolin repeat | 636 | 712 | IPR007123 | - | |
| Car07g00278 | 958 | Pfam | Gelsolin repeat | 28 | 111 | IPR007123 | - | |
| Car07g00278 | 958 | SUPERFAMILY | Actin depolymerizing proteins | 382 | 528 | - | - | |
| Car07g00278 | 958 | MobiDBLite | consensus disorder prediction | 801 | 897 | - | - | |
| Car07g00278 | 958 | Gene3D | Severin | 7 | 132 | IPR029006 | - | |
| Car07g00278 | 958 | ProSiteProfiles | Headpiece (HP) domain profile. | 893 | 958 | IPR003128 | GO:0003779|GO:0007010 | |
| Car07g00278 | 958 | MobiDBLite | consensus disorder prediction | 823 | 844 | - | - | |
| Car07g00278 | 958 | MobiDBLite | consensus disorder prediction | 745 | 782 | - | - | |
| Car07g00278 | 958 | SMART | VILL_6 | 622 | 719 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | SMART | VILL_6 | 19 | 117 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | SMART | VILL_6 | 137 | 234 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | SMART | VILL_6 | 519 | 606 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | SMART | VILL_6 | 254 | 344 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | SMART | VILL_6 | 392 | 489 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | CDD | gelsolin_S3_like | 254 | 343 | - | - | |
| Car07g00278 | 958 | CDD | gelsolin_S4_like | 386 | 485 | - | - | |
| Car07g00278 | 958 | Gene3D | Severin | 247 | 357 | IPR029006 | - | |
| Car07g00278 | 958 | Gene3D | Severin | 522 | 612 | IPR029006 | - | |
| Car07g00278 | 958 | CDD | gelsolin_S1_like | 12 | 124 | - | - | |
| Car07g00278 | 958 | Pfam | Villin headpiece domain | 923 | 958 | IPR003128 | GO:0003779|GO:0007010 | |
| Car07g00278 | 958 | PRINTS | Gelsolin family signature | 323 | 344 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | PRINTS | Gelsolin family signature | 411 | 427 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | PRINTS | Gelsolin family signature | 436 | 454 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | PRINTS | Gelsolin family signature | 469 | 489 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | PRINTS | Gelsolin family signature | 532 | 552 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | PRINTS | Gelsolin family signature | 592 | 611 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | PRINTS | Gelsolin family signature | 644 | 666 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | PRINTS | Gelsolin family signature | 673 | 692 | IPR007122 | GO:0051015 | |
| Car07g00278 | 958 | CDD | gelsolin_S2_like | 138 | 232 | - | - | |
| Car07g00278 | 958 | SUPERFAMILY | Actin depolymerizing proteins | 10 | 147 | - | - | |
| Car07g00278 | 958 | Gene3D | Villin headpiece domain | 896 | 958 | IPR036886 | GO:0003779|GO:0007010 | |
| Car07g00278 | 958 | SUPERFAMILY | Actin depolymerizing proteins | 595 | 717 | - | - | |
| Car07g00278 | 958 | CDD | gelsolin_S6_like | 621 | 720 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car07g00278 | Car-Chr7 | 2528036 | 2538099 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car07g00278 | - | - | gmx:100807762 | 1634.77 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car01g01124 | 01 | 11392585 | 11404978 | Car07g00278 | 07 | 2528036 | 2538099 | PCT |