LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g03681	ATGTTAGTCTTTCCTTCTTCTTGGAGAAACGAAGTTGTTACGATCAGCACCATGTCTGAGAAAACACGTTCCTTTCACAAATCTCCTCTCTCCAATCCCTCTTCCGTCAAACCCTCCGACTCCACAAACGACGCTTCAGTGTCCCACCAACAAGTAACTCGTGTCTACGTTAGAAGAaataatagtaataataataaAAGAGCCAAAGGAATCACCACAACCAAACTTCAACAAAACCACCATCTACCCCCAACTCAAACTCACAAAAAGTTTGGTGGTTTACCTGAAATTGAAGATTTTGCATATAGAGGACCAAATGAATTGACTCAGTTTAGAAAATCAGAAATTAGCTCAGATGTGATTGTGAAACCAGCTGAAGAAAGTGAAGTTGCTTCTGCAGCACACAGAAGTGAATCCCCTGCCGACTGGGAAGAGACGCTTGAAGGTATTCGCAAAATGAGGTGTTCTGCGGATGCACCGGTAGACACTATGGGATGTGAGAAAGCTGGTTCTACACTACCTCCTAAGGAAAGAAGATTCGCTGTCCTGGTATCTTCCCTTTTATCAAGCCAAACCAAGGATCATGTTAATCATGGAGCAATCCAACGTCTTCTTCAAAATGATTTGCTTACTCCTGATGCAATCAACAATGCTGATGAAGAAACCATCAAAAAGTTGATCTACCCTGTTGGGTTTTATACAAGAAAAGCCACAAACTTGAAAAAAATAGCAAATATTTGTCTGATGAAGTATGGTGGAGACATACCTAGCACACTTGAGCAACTACTCTTACTTCCAGGCATAGGTCCTAAGATGGCTCACTTGGTTATGAATGTTGCATGGAACAATGTCCAAGGGATATGCGTCGATACTCATGTCCACCGCATTTGCAATCGGCTAGGTTGGGTGTCAAGATTAGGCACAAAACAGAAAACTTTGACACCTGAAGAGACAAGAGAATCACTGCAAAGGTGGCTTCCAAGGGAAGAATGGGATCCAATAAATCCTCTATTGGTAGGATTTGGACAGACAATTTGTACACCTCTAAGACCTCGTTGTGGAGAATGTGGTATAAGTCACTTGTGTCTGTCAGCGTTCAAGGAGGCCTCAGACTCGAGCTCATTTTCCAAGTCCACAAAGTCCCGAAGGAACAAGAAGCTTTAA	1164	0.4218	MLVFPSSWRNEVVTISTMSEKTRSFHKSPLSNPSSVKPSDSTNDASVSHQQVTRVYVRRNNSNNNKRAKGITTTKLQQNHHLPPTQTHKKFGGLPEIEDFAYRGPNELTQFRKSEISSDVIVKPAEESEVASAAHRSESPADWEETLEGIRKMRCSADAPVDTMGCEKAGSTLPPKERRFAVLVSSLLSSQTKDHVNHGAIQRLLQNDLLTPDAINNADEETIKKLIYPVGFYTRKATNLKKIANICLMKYGGDIPSTLEQLLLLPGIGPKMAHLVMNVAWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTLTPEETRESLQRWLPREEWDPINPLLVGFGQTICTPLRPRCGECGISHLCLSAFKEASDSSSFSKSTKSRRNKKL	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g03681	387	Pfam	HhH-GPD superfamily base excision DNA repair protein	184	313	IPR003265	GO:0006284
	Car06g03681	387	MobiDBLite	consensus disorder prediction	20	68	-	-
	Car06g03681	387	ProSitePatterns	Endonuclease III iron-sulfur binding region signature.	346	362	IPR004035	-
	Car06g03681	387	CDD	ENDO3c	180	342	IPR003265	GO:0006284
	Car06g03681	387	SMART	endo3end	188	344	IPR003265	GO:0006284
	Car06g03681	387	Hamap	Endonuclease III-like protein 1 [NTHL1].	139	368	IPR030841	GO:0003906\|GO:0005634\|GO:0006281\|GO:0006285\|GO:0019104
	Car06g03681	387	Gene3D	-	285	362	IPR023170	-
	Car06g03681	387	Pfam	Helix-hairpin-helix motif	250	278	IPR000445	GO:0003677
	Car06g03681	387	PANTHER	ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC	68	382	-	-
	Car06g03681	387	ProSitePatterns	Endonuclease III family signature.	253	282	IPR004036	-
	Car06g03681	387	SUPERFAMILY	DNA-glycosylase	151	368	IPR011257	GO:0003824\|GO:0006281
	Car06g03681	387	Gene3D	Hypothetical protein; domain 2	175	284	-	-
	Car06g03681	387	SMART	ccc3	345	365	IPR003651	GO:0051539
	Car06g03681	387	PANTHER	ENDONUCLEASE III-LIKE PROTEIN 1	68	382	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g03681	Car-Chr6	68549917	68553997	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g03681	K10773		-	gmx:100818398	483.026

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car01g02652	01	52108021	52111585	Car06g03681	06	68549917	68553997	PCT