Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02652 ATGAGCAAAATTTTGATGTTGTGTCAGTTTCCTACTACACAGAAGTTTGGCCAGCTTGCATACAGAGGAACAAATGAATTGGGTCAATTTAATGAGTGTCCTGCCAATTGGGAAAATGTGCTTGAAGGGATTCGTAAAATGAGATGCTCAGACGCAGAGGCTACTGGTGATCGAGAAGATGATGATATTCTACCTCTTAAGGAAAGAAGATTTGCTGTCCTGGCATCTTCTCTTTTATCGAGCCAAACTAAGGAACATGTTACTCGTGGAGCAACTCATCGTCTTCGTCAAAATGGTTTGCTTACTGCCAATGCACTCAACAAAGCTGATGAAGAAACTATCAAAAAGTTGATTTACCCTGTAGGGTTTTATATAAGAAAAGCTAGCAACTTGAAGAAAATTGCTCATATTTGTCTCACAAAGTATGATGGAGACATTCCTAACTCGATTGAAGAACTACTCTCACTTCCAGGCGTAGGTCCTAAGATTGCTCATTTGGTTATGATTATTGGATGGAACAATGTACAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAATCGACTTGGATGGGTTTCGAGATCAGGCACAAAACAGagaacttccttaccggaagaaacaagaaaggcgctgcaacggtggcttccaagggaagaatgggttgcaATAAATCCTCTTTTGGTCGGATTTGGACGGACAATTTGTACTGCTATGCGGCCTCGCTGCGGAGAGTGTGGTGTAAGCAGGTTCTGCCCATCAGCATTCAAGGAAACTTCTATCCCATCTTCCAACTCCAATAAGTCTGTATTGAACAAGAAGCCTGAATCAAGCTGA 840 0.3798 MSKILMLCQFPTTQKFGQLAYRGTNELGQFNECPANWENVLEGIRKMRCSDAEATGDREDDDILPLKERRFAVLASSLLSSQTKEHVTRGATHRLRQNGLLTANALNKADEETIKKLIYPVGFYIRKASNLKKIAHICLTKYDGDIPNSIEELLSLPGVGPKIAHLVMIIGWNNVQGICVDTHVHRICNRLGWVSRSGTKQRTSLPEETRKALQRWLPREEWVAINPLLVGFGRTICTAMRPRCGECGVSRFCPSAFKETSIPSSNSNKSVLNKKPESS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02652 279 CDD ENDO3c 71 233 IPR003265 GO:0006284
Car01g02652 279 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 32 275 - -
Car01g02652 279 Pfam HhH-GPD superfamily base excision DNA repair protein 76 216 IPR003265 GO:0006284
Car01g02652 279 SUPERFAMILY DNA-glycosylase 65 260 IPR011257 GO:0003824|GO:0006281
Car01g02652 279 SMART endo3end 79 235 IPR003265 GO:0006284
Car01g02652 279 Gene3D Hypothetical protein; domain 2 58 170 - -
Car01g02652 279 ProSitePatterns Endonuclease III family signature. 144 173 IPR004036 -
Car01g02652 279 SMART ccc3 236 256 IPR003651 GO:0051539
Car01g02652 279 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 32 275 - -
Car01g02652 279 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 237 253 IPR004035 -
Car01g02652 279 Gene3D - 171 259 IPR023170 -
Car01g02652 279 Hamap Endonuclease III-like protein 1 [NTHL1]. 33 259 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Car01g02652 279 Pfam Helix-hairpin-helix motif 141 168 IPR000445 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02652 Car-Chr1 52108021 52111585 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02652 K10773 - gmx:100805799 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02652 01 52108021 52111585 Car06g03681 06 68549917 68553997 PCT