Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03613 ATGTTGTCTGAGTTGGGAAGAAGACCGATGCTTAGCAATAACGAGGGTTGTTTTGGTGATGAATTGGAGAAGGAAATAGGGATGTTGCTCCGCGAACAGCGTAGACAAGACGGCGATGATCACGAAAGGGAGCTTAATATATTTAGAAGTGGATCAGCTCCTCCAACTGTGGAGGGTTCTTTGAATGCAGTTGGAGGGTTGTTTGGTGGTGGTGGTGCCGCCAGTTATTCGGATTTTCCTGGGACTAAAGATGTGAATGGAATTGTTTCTGAGGATGAGCTTAGGTCTGATCCAGCTTATCTGTCATACTATTATTCCAATGTGAATTTGAATCCTAGGCTTCCACCTCCTTTGTTGTCAAAGGAGGATTGGAGGTTTCAACAAAGACTTAAAGGTGGAACTTCAGTTGTTGGTGGAATTGGTGATAGGAGGAAAGGAAACATGACTGATGATAATGGTGGTAGATCAATGTTTTCGACACCGCCGGGTTTTAACTTTAGGAAACAAGACAGGAGTGAGGTGGATAATGAAAAAACAAGAGGTTCTGCTGAATGGGGCGGTGATGGTCTTATTGGTTTGCCTGGATTGGGGCTTAGAAACAAACAAAAGAGCCTTGCAGAAATTTTTGAGGATGATATGGGACGTAACACCTCTGTCACAGGCCATCCTTCTCGTCCAGCAAGTCGTAATGCATTTGATGAAAATGTCGATATCATAAGTACAACTGCTGAAGCTGAGTTGGCTCATGTGCGCCATGATCCAACAGGATCCAATGTTCAAGGATCATCTGCAACTCAAAATATTGGTCTGCCAGCTTCGTACTCTTATGCTGCCGTACTAGGATCATCCATGTCTAGAAGCACTACACCCGATCCACTACATGTTACTAGGGCTCCTAGTCCATGCCTCACACCTATTGGTGGAGGGAGAGGCGTTGCTTCCGACAAGAGAGGCATTGTCAGTCCAGATGCATTTAACGGTGTTTCATCTGGCCTAAATGAGTCAGCTGATCTTGTGGCTGCATTATCAGGGATGAAATTGTCATCAGATAATATGTTAGACAGTAAAAATCATTTGCAATCACAAGTTGAATCAGACGTTGATAATCATCAGAGATACCTTTTTGGTATGCAGGGTGGTCAAGATCACAGCAACCAACAATCATATCTAAAAAAATCTGAATCAGGGTATTTGCAGAGTTCAGCAAGCAAGAACAGTAGGAGTGGGTCAGACCTCAATAATTTATCCCTGCATAGACAGGCTGAGCTACAAAACTCTACCTCTCCTTCCAACAACTCGTATTTCAAGGGATCACCTACCTCCCATTATAGTGGAGGAGGTAATTTTCCGAATTCATCGTTTCCTAACTATGGCATAAGTGGTGGGTATGCTGGAAATCCAGCATTGACATCCTTGATGACTAACCAATACGGCACAGGTAATCTGCCACCGCTTTTTGAAAATGTTGCAGCGGCGTCGGCATTGGCATCCCCTAGAATGGACTCAAGAATTCTTGGAGGTGGTTTGGCTTCTGGAGCTGGTTCTTCTGATATGCATAGCCTTGGTGGAATGGGAAATCAAATTGCAGGTGGTGCTCTTCAGGCTCCGTTTGTTGATCCGATGTATCTTCAGTATGTGAGGACATCCGAGTACGCTGCAGCACAACTTGCTGCTCTTAACAACCCCTCTGTGGATCAGAACTACCTGGATAATTCATACATGAATTTGCTTGAGCTTCAGAAAGCTTATCTTGGGTCTGTTCTCTCGCCTCAGAAGTCGCAATACAATGTACCAATGGGTGGTAAATCAGGCAACAGCAATCACCATGGTTATTACGGAAATCCAGCTTATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGGTTCTCCTGTTGGATCTGGAAGTCCTATTAGGCACAATGATCTGAACATGCGTTTTGCTTCTGGAATGAGGAACTTATCTGGAGTCATGGGACCTTGGCATGTAGATACTGGGAACATGGATGAAAGCTTTGCTTCTTCGCTGTTGGAAGAGTTTAAAAGCAATAAAGCCAAGTGTTTTGAGCTCGCTGAAATTGCTGGTCATGTTGTTGAGTTCAGTGCTGATCAATACGGAAGCCGATTTATTCAACAGAAGCTTGAGACAGCAACTATAGACGAAAAAAATATGGTTTATCAGGAAATCATGCCACATGCTCTTGCTTTGATGACTGATGTCTTCGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGAATTACAGAGAAGAGAATTAGCCAACAAGCTTATTGGTCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGGGTAATCCAGAAGGCTATTGAAGTTGTTGATCTGGATCAGAAAATAGAGATGGTTCAAGAGCTTGACGGAAACATCATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGTGTCCCTGAAGATGCAATCGACTTTATTATTTCAACATTTTTTGATCAAGTTGTGACACTCTCAACGCATCCATACGGCTGTCGTGTGATACAGAGAGTACTGGAGCACTGCGAAAACCCTACAACACAACAAAAGGTTATGGATGAGATTTTAGGAACTGTTAGCATGTTAGCTCAGGATCAGTATGGAAACTATGTCGTTCAGCATGTACTGGAACATGGGAAGCCTCATGAGCGTTCTACTATAATAAAGGAATTAGCAGGGAAAATAGTTCAAATGAGTCAACAAAAGTTTGCTTCCAATGTTGTGGAGAAATGCTTGACCTTCAGTGGTCCTTCAGAACGTCAAATACTAGTGAATGAGATGCTTGGAACCACAGATGAAAATGAGCCTCTTCAGGCGATGATGAAAGATCAGTTTGCAAATTACGTTGTCCAAAAGGTGCTGGAAACATGTGACGACCACCAACGCGAGCTGATTCTTTCACGAATCAAGGTTCATTTGAATGCATTAAAAAAGTACACCTACGGAAAGCATATCGTCGCTCGTGTAGAGAAACTCGTTGCTGCTGGAGAAAGAAGAATTGCTGCTCAGACTCCTCAACCTGCCTAA 3093 0.4316 MLSELGRRPMLSNNEGCFGDELEKEIGMLLREQRRQDGDDHERELNIFRSGSAPPTVEGSLNAVGGLFGGGGAASYSDFPGTKDVNGIVSEDELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGTSVVGGIGDRRKGNMTDDNGGRSMFSTPPGFNFRKQDRSEVDNEKTRGSAEWGGDGLIGLPGLGLRNKQKSLAEIFEDDMGRNTSVTGHPSRPASRNAFDENVDIISTTAEAELAHVRHDPTGSNVQGSSATQNIGLPASYSYAAVLGSSMSRSTTPDPLHVTRAPSPCLTPIGGGRGVASDKRGIVSPDAFNGVSSGLNESADLVAALSGMKLSSDNMLDSKNHLQSQVESDVDNHQRYLFGMQGGQDHSNQQSYLKKSESGYLQSSASKNSRSGSDLNNLSLHRQAELQNSTSPSNNSYFKGSPTSHYSGGGNFPNSSFPNYGISGGYAGNPALTSLMTNQYGTGNLPPLFENVAAASALASPRMDSRILGGGLASGAGSSDMHSLGGMGNQIAGGALQAPFVDPMYLQYVRTSEYAAAQLAALNNPSVDQNYLDNSYMNLLELQKAYLGSVLSPQKSQYNVPMGGKSGNSNHHGYYGNPAYGVGLSYPGSPMANSGSPVGSGSPIRHNDLNMRFASGMRNLSGVMGPWHVDTGNMDESFASSLLEEFKSNKAKCFELAEIAGHVVEFSADQYGSRFIQQKLETATIDEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLELQRRELANKLIGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIISTFFDQVVTLSTHPYGCRVIQRVLEHCENPTTQQKVMDEILGTVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGKIVQMSQQKFASNVVEKCLTFSGPSERQILVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQTPQPA 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03613 1030 SUPERFAMILY ARM repeat 678 1012 IPR016024 -
Car06g03613 1030 Pfam Nucleic acid binding protein NABP 297 694 IPR012940 -
Car06g03613 1030 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1023 - -
Car06g03613 1030 MobiDBLite consensus disorder prediction 378 412 - -
Car06g03613 1030 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 675 1015 IPR033133 GO:0003723
Car06g03613 1030 MobiDBLite consensus disorder prediction 168 182 - -
Car06g03613 1030 ProSiteProfiles Pumilio RNA-binding repeat profile. 839 875 IPR001313 GO:0003723
Car06g03613 1030 MobiDBLite consensus disorder prediction 152 166 - -
Car06g03613 1030 Gene3D - 675 1021 IPR011989 -
Car06g03613 1030 SMART pum_5 695 730 IPR001313 GO:0003723
Car06g03613 1030 SMART pum_5 803 838 IPR001313 GO:0003723
Car06g03613 1030 SMART pum_5 954 989 IPR001313 GO:0003723
Car06g03613 1030 SMART pum_5 839 875 IPR001313 GO:0003723
Car06g03613 1030 SMART pum_5 876 911 IPR001313 GO:0003723
Car06g03613 1030 SMART pum_5 767 802 IPR001313 GO:0003723
Car06g03613 1030 SMART pum_5 912 947 IPR001313 GO:0003723
Car06g03613 1030 SMART pum_5 731 766 IPR001313 GO:0003723
Car06g03613 1030 MobiDBLite consensus disorder prediction 135 186 - -
Car06g03613 1030 ProSiteProfiles Pumilio RNA-binding repeat profile. 876 911 IPR001313 GO:0003723
Car06g03613 1030 ProSiteProfiles Pumilio RNA-binding repeat profile. 731 766 IPR001313 GO:0003723
Car06g03613 1030 Pfam Pumilio-family RNA binding repeat 814 837 IPR001313 GO:0003723
Car06g03613 1030 Pfam Pumilio-family RNA binding repeat 771 804 IPR001313 GO:0003723
Car06g03613 1030 Pfam Pumilio-family RNA binding repeat 882 913 IPR001313 GO:0003723
Car06g03613 1030 Pfam Pumilio-family RNA binding repeat 843 878 IPR001313 GO:0003723
Car06g03613 1030 Pfam Pumilio-family RNA binding repeat 917 950 IPR001313 GO:0003723
Car06g03613 1030 Pfam Pumilio-family RNA binding repeat 962 991 IPR001313 GO:0003723
Car06g03613 1030 Pfam Pumilio-family RNA binding repeat 735 769 IPR001313 GO:0003723
Car06g03613 1030 Pfam Pumilio-family RNA binding repeat 699 733 IPR001313 GO:0003723
Car06g03613 1030 ProSiteProfiles Pumilio RNA-binding repeat profile. 912 947 IPR001313 GO:0003723
Car06g03613 1030 ProSiteProfiles Pumilio RNA-binding repeat profile. 767 802 IPR001313 GO:0003723
Car06g03613 1030 ProSiteProfiles Pumilio RNA-binding repeat profile. 803 838 IPR001313 GO:0003723
Car06g03613 1030 ProSiteProfiles Pumilio RNA-binding repeat profile. 948 989 IPR001313 GO:0003723
Car06g03613 1030 ProSiteProfiles Pumilio RNA-binding repeat profile. 695 730 IPR001313 GO:0003723
Car06g03613 1030 MobiDBLite consensus disorder prediction 376 412 - -
Car06g03613 1030 CDD Pumilio 696 1011 IPR033712 GO:0003723
Car06g03613 1030 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03613 Car-Chr6 67464542 67471062 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03613 K17943 - gmx:100787039 1685.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03613 06 67464542 67471062 Car06g03613 06 67464542 67471062 ECH
Car06g03613 06 67464542 67471062 Car01g02599 01 51662039 51668162 ECH