Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02599 ATGTTGTCTGAATTGGGTAGGAGACCAGTGATTGGTGGTAACGATGGTTCATTTGGTGATGAATTTGAGAAGGAAATAGGTATGTTGCTTCGTGATCAAAGAAGACATGAGGTTGATGATCATGAACCTGAACTTAATTTGTATAGGAGTGGATCAGCTCCTCCCACTGTTGAGGGTTCTCTGAGTGCAGTTGGTGGGTTATTTGGTGGTGGTTCTGCGGCATCAGCTGCTGTTTCAGAGTTTTCGGGTAATGGCTTTGCTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTTCATATTATTACAGCAATGTGAATTTGAATCCTAGACTTCCACCTCCTTTGTTATCAAAGGAGGATTGGAGGTTTACACAGAGACTAAAAGGTGGAGCTTCTGTAATTGGTGGAATTGGTGATAGGAGGAAAGTGAATGGAGCTGCTGATGATAATGGTGGTAGATCAATCTTTGCTGCACCTCCTGGTTTTAACATGAGGAAAAGAGAGAGTGAGGTGGTGGTTGATGAAAAAATTAGAGGTTCTGCTGAGTGGAGTGGTAATGGACTCATTGGTTTGCCAGGACCTGGTCTTGGGACCAAACAAAAGAGCCTTGCAGAAATTTTTCAGGATGACTTGGGACGTGCCACACCTGTCACAGGCTTTCCCTCTCGTCCAGCCAGTCGTAATGCATTTGATGAAAATGTTGAGATCACATCTTCCGCCGAAGCTGAGCTGGCTCATTTGCGCCATGATTCCTCAGTCACTGATGCTTTAAGATCTGGATCAAATGTTCAGGGGTCACCTGCAGCCCAAAATGTTGGTCCCCAAGCTTCATATTCTTATGCTGCTGCACTTGGTTCTTCCCTGTCACAAAGCACTACTCCTGATCCACAAATTGTTGCTAGGGCTCCCAGTCCTTGCCCCACACCTATTGGTAGTGGGAGAGCTGTTGCTGCTGAGAAGAGAAGTATCACCAGTCCTGATGCATTTAACGATATTTCATCAGGCATCAATGGGTCTGCAGATATTGCGGCTGCAATGTCTAGCATGAATCTGTCAGCAGGTGATGTGTTAGATGGCGATAACCATTTCACATCACAGGTTGAGTCGGATGTTAATAATTATCAAAGATATCTTTTCGGTATGCAAGGTGGTCAGGATCACGGCAAGCAACATGCATATTTAAAGAAGTCTGAATCAGGACACTTGCAGAAAACAGCTCACTATGATTCAGGTAAGAGAAGTGGGAGTGTGTCAGACACAAAAAATCTGTCCTTGGATAGGCAGGTCGAGCTACAAAAGTCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTAGCTCCGCTTATAGCGGTGGAGGTGGTTTGCCCGCACAATTCCAGGCTTCAGATGGTACCAACTCAACGTATAATAACTATGGCCTGAGTGGATATGGTGGAAATCCAGCTGGGGCATCTTTCATGGCTAACCAACTTGGAACTGGTAATCTACCACCCCTATTTGAAAATGTTGCTGCAGCATCAGCAATGGCATCCCCTGGAATGGACTCGAGAATTCTCGGAGGTGGTTTGGCCTCTGGAGTTGCTTCTCCATCTGATGTGCATTCCCTCAGTAGAATTGGAAATCCAATTGCCAGTGGTGCTCTGCAGGCTCCTTTTGTTGATCCCATGTATCTTCAGTACATGAGGACACCTGAGTATGCTACTGCACAACTTGCTGCTCTTAACGACCCTTCCGTGGACAGGAATTACTTGGGCAACTCGTACATGAATATACTTGAGCTTCAGAAAGCTTATCTTGGGTCTCTGCTTTCACCTCAGAAGTCACCATACAATGTTCCAATGGGTGGTAAATCTGGCGGTTCCAATCATCATGGTTATTATGGAAATGCTGCTTATGGTGTTGGTTTGTCTTATCCAGGAAGTCCAATGGCAAACTCGTTATCTAGTTCTCCGGTTGGATCTGGCAGTCCTATTAGGCACAATGACCTGAATATGCATTTTGCTTCTGGAATGAGGAATGTAGCTGGAGTCATGGGACAATGGCACCTAGATGCTGGAAATGCAGATGAAAATTTTGCTTCATCTCTGTTGGAAGAGTTTAAAAGCAACAAAACGAAGTGTTTTGAGCTGTCTGAAATTTCTGGTCATGTTGTTGAATTCAGTGCTGATCAATATGGGAGCCGGTTTATTCAACAAAAGCTTGAAACAGCTAGTACTGAAGAAAAAAATATGGTTTATCAGGAAATCACGCCACATGCCCTTGCTTTAATGACTGATGTATTTGGTAATTATGTGGTTCAGAAGTTTTTTGAGCATGGACTTGCCTCCCAGAGAAGAGAGTTAGCCAACAAGCTTTACGGCCATGTTCTGACGCTTAGCCTTCAAATGTATGGTTGTCGAGTCATCCAGAAGGCCATAGAAGTTGTTGATCTGGACCAGAAGATTAAAATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACGTGATCAGAATGGCAACCATGTCATTCAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCGACTTTATTGTCTCAACTTTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGAGAGTACTGGAGCACTGCGAAGATCCTAACACACAACAAAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATCAGTATGGCAACTACGTCGTCCAGGTTTATTTTTCATAA 2760 0.4402 MLSELGRRPVIGGNDGSFGDEFEKEIGMLLRDQRRHEVDDHEPELNLYRSGSAPPTVEGSLSAVGGLFGGGSAASAAVSEFSGNGFASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFTQRLKGGASVIGGIGDRRKVNGAADDNGGRSIFAAPPGFNMRKRESEVVVDEKIRGSAEWSGNGLIGLPGPGLGTKQKSLAEIFQDDLGRATPVTGFPSRPASRNAFDENVEITSSAEAELAHLRHDSSVTDALRSGSNVQGSPAAQNVGPQASYSYAAALGSSLSQSTTPDPQIVARAPSPCPTPIGSGRAVAAEKRSITSPDAFNDISSGINGSADIAAAMSSMNLSAGDVLDGDNHFTSQVESDVNNYQRYLFGMQGGQDHGKQHAYLKKSESGHLQKTAHYDSGKRSGSVSDTKNLSLDRQVELQKSAVSPNNSYFKGSPSSAYSGGGGLPAQFQASDGTNSTYNNYGLSGYGGNPAGASFMANQLGTGNLPPLFENVAAASAMASPGMDSRILGGGLASGVASPSDVHSLSRIGNPIASGALQAPFVDPMYLQYMRTPEYATAQLAALNDPSVDRNYLGNSYMNILELQKAYLGSLLSPQKSPYNVPMGGKSGGSNHHGYYGNAAYGVGLSYPGSPMANSLSSSPVGSGSPIRHNDLNMHFASGMRNVAGVMGQWHLDAGNADENFASSLLEEFKSNKTKCFELSEISGHVVEFSADQYGSRFIQQKLETASTEEKNMVYQEITPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLYGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCEDPNTQQKVMDEILGAVSMLAQDQYGNYVVQVYFS 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02599 919 CDD Pumilio 711 915 IPR033712 GO:0003723
Car01g02599 919 Gene3D - 695 919 IPR011989 -
Car01g02599 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 787 822 IPR001313 GO:0003723
Car01g02599 919 SUPERFAMILY ARM repeat 698 917 IPR016024 -
Car01g02599 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 896 919 IPR001313 GO:0003723
Car01g02599 919 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 695 919 IPR033133 GO:0003723
Car01g02599 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 715 750 IPR001313 GO:0003723
Car01g02599 919 MobiDBLite consensus disorder prediction 437 458 - -
Car01g02599 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 859 895 IPR001313 GO:0003723
Car01g02599 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 823 858 IPR001313 GO:0003723
Car01g02599 919 MobiDBLite consensus disorder prediction 398 420 - -
Car01g02599 919 SMART pum_5 823 858 IPR001313 GO:0003723
Car01g02599 919 SMART pum_5 715 750 IPR001313 GO:0003723
Car01g02599 919 SMART pum_5 751 786 IPR001313 GO:0003723
Car01g02599 919 SMART pum_5 859 895 IPR001313 GO:0003723
Car01g02599 919 SMART pum_5 787 822 IPR001313 GO:0003723
Car01g02599 919 PANTHER PUMILIO HOMOLOG 1-RELATED 36 916 - -
Car01g02599 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 751 786 IPR001313 GO:0003723
Car01g02599 919 Pfam Nucleic acid binding protein NABP 302 714 IPR012940 -
Car01g02599 919 Pfam Pumilio-family RNA binding repeat 791 824 IPR001313 GO:0003723
Car01g02599 919 Pfam Pumilio-family RNA binding repeat 902 915 IPR001313 GO:0003723
Car01g02599 919 Pfam Pumilio-family RNA binding repeat 719 753 IPR001313 GO:0003723
Car01g02599 919 Pfam Pumilio-family RNA binding repeat 863 898 IPR001313 GO:0003723
Car01g02599 919 Pfam Pumilio-family RNA binding repeat 834 857 IPR001313 GO:0003723
Car01g02599 919 Pfam Pumilio-family RNA binding repeat 755 786 IPR001313 GO:0003723
Car01g02599 919 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02599 Car-Chr1 51662039 51668162 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02599 K17943 - gmx:100818836 1454.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02599 01 51662039 51668162 Car01g02599 01 51662039 51668162 ECH
Car06g03613 06 67464542 67471062 Car01g02599 01 51662039 51668162 ECH