Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03529 ATGAGTGATGAAGGAGAAAGGACTTGTCCTCTTTGCGCTGAAGAGATGGATTTGACAGATCAGCAGCTGAAACCTTGTAGATGTGGTTATGAGATATGTGTCTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGATACCGATGGGCGATGCCCTGCGTGTCGTTCTCCTTACGATAAGGAAAAGATTGTTGGGACGGCGGCAAACTGTGAGAGATTGCTGAATGGAATTAATATGGAGAAAAAGGTGAAGAATCAGAAAGCGAAGTCTAAGTCTTCTGATGGGCGGAAGCAGCTGAGTAGTGTGCGAGTGATTCAGCGGAACCTTGTTTACATAGTTGGATTGCCTCTCAATCTGGCAGATGAAGATCTTCTCCAGAAGCGGGAGTATTTTGGTCAGTATGGCAAGGTCTTAAAAGTGTCAATGTCACGGACAGCAGCTGGCGTCATTCAACAGTTTCCTAATGATACTTGCAGTGTATATATTACTTATTTAAAGGAAGAGGAAGCAATTCGATGTATTCAAAACGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGTATAAATACCTGCTTTTATTAAAACAACATACACATGCCATTGGTCGTGCTTATAATTGTGTTTTTGGTCTTGTACATTTCAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATGCGCCTTGCACCAACCCTGATTGTCTGTATCTGCATGAGGTTGGCTCTCAAGAAGACAGCTTTACAAAAGATGAAATAATTTCGGCTTACACTAGAAGTCGAGTTCAACAAATCACTGGTGCCACAATCAATATGCAGCGGCGGTCAGGGAATGTATTACCTCCCCCTCTAGATGATTGCACAAATAATTCTACAGGAAATCCCATTCTTAATAATAATGCTCCAAGTAACTCTGTTTGCACGGCAAGAAGTCCGCCTTCCAATGGGATCAATGGGAAGCATGTTCCTCTTCCCACTAGTGCTGCGTGGGGTACACAGGCCACAAGTTGTCAGCCACCTGTTGGAGGTCTATCATATCCATCTGGGCTGTCCAAAACAAAAATTGATACAGTCCAAAGCACACTAGCCTTTTCTACTGCTGTTACGGGCACAATTCAGGCTTCTGCTGCACAGTGTGATGGTTCAAGGAGGCCTACATCGAGTGATGCAAGTCATAATACAATACCTAGGGTGAAAACTGAATTTCAGAAACCTGTTAAACAATATAATAGCATAGACAGTGTGGCTAGTGCAGGTGTAAAAGCTCCAGCATCTGATGCTTCTTCTCCTGTGCCTGTCAATCTGAAGAGCGAGTTGTCTTCTCGACCATTGTCCCGGGATAGTGATAGAGGCAATTGTAATATAGCAAATACATTAAATTCTACTAACATTACTGGACATCCTTTTAGCTCTGGTCCTGAGGAAGCAGTGTCTGCTACCAATGAAGTGATTCGGAACTTGTCCAGTGAGTTCTCCTCAATTAACATTGGTATAAACAAGCCTGGTAGCCCACCTACTGATGATGTCTTGACTAAATCTCTTCAAATTCAAGAAAGATCACAATATGATGTTGACAGATTTGAAGACACAATAACAACTAATGTGGCTGGTAAAATTTCCATATCAGATAACAGCGGTTTTAATTCAACAGAGAAGGGTGGAGGGATATTAGATTCTCAATCTCAAGTAGTATCCGATACAGCTGAAATTGAAGATGATGTGACATCTTTTGATAATCAAAGACTGAAGGATCCAGAAGTTTGTCTTTCTTATTTGCCTAAGACAACAAATTTCCTTCATGTATCAAAACTTTCTAGTCCTTGTCTAATGCAGCATGAACCTCGTAATACTGTGAATGCTGGTTCTCTTTCTTCTGATGATATAGTTCGGGATGAATCTATTTTACATTCGTCTAGCATGTTATGTAATGGTTACCCTGAGAAATTGATTAGTGGCAGCTCTAATGGTTTGCTTAATAATGAAAGAAACAGGCAAAGCCTTGGACGATTAGTTGGTGAAACTGTTAATGCTGGATGTGATCCTGCAATTGATAAGGGCGAAAGTAGCATAATCTCAAATATTCTGTCCATGGATTTTGATCCATGGGATGACTCCCTAACATCACCTCATAATATAGTGAAGTTGTTGGGTGACAATACTGATGACCAGCCTTGTCCTTTAAAAAAATCTAGTTCTTGGAAAATTCAAAGTAACAATCAGTCAAGGTTCTCTTTTGCAAGGCAAGAAGAATCCGAAATTCAAACTTCCGATGTACATTCATCCTATGGTGTCAGCCAGCAACAGGTTAAGAGCCACACACTCAACCAGGATCTGGCAGAAAGAGACTTTTATATGGATAAGTTGGGTGTTGCAAATGGCTTTCCTACTAGTAACTTCGATGAAGCTGAAAATTTAGGCAGCGTTCATTCCATTTCTTCTTCCAATAAGCTTTCTGCTATTTCAAGAGCACAAGTTTCAGCTCCGCCAGGATTTTCAATTCCAAGTAGGCTGCCACCTCCTGGTTTTTCTTCGCATGAGAGATCAGAGCAGACTTTTGACTCCATATCTGGGAATTCATTACTTGATCATTCTTCCTTTTTGAGAAATTCACATCAGACACCCTCAGCTGGAAATATTGGCGGCACAGGTGACATTGAATTTATGGATCCTGCTATTTTGGCAGTCGGCAAGGGGAGGCTTCAAGGTGCACAAAACAGCCAATCATTGGACATGCGATCAAATTTCATGCCACAATTAAATTATTTTGAAAATGAGGCCAGACTACAACTCCTGATGCAAAGATCTCTAACACAGCAGCAAAACCTTAGATTTTCTGAAATTGGGAATAATTTTTCTCAACTGGGCGATTCATATGGTATTTCTTCGAGGTTAGATCAATCCCAAGTCAGTAACTTAGCCCCTTTCTCTCAGCTGTCCCTGCAGCAGTCTACAAATGCAATCTTGTCAAATGGCCAATGGAATGGGTGGAATGAGGTGCAGAGTGGGAATGGTCTGGGTGTGGCCGAACTTTTGAGGAATGAAAGACTTGGATTTAACAAGTTTTACTCAGGATACGATGATTCAAAATATCGGATGCCAAATTCTGGGGATCTATACAACAGGACGTTTGGGATGTGA 3156 0.4138 MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKIVGTAANCERLLNGINMEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQKREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYLKEEEAIRCIQNVHGFVLEGRPLRYKYLLLLKQHTHAIGRAYNCVFGLVHFRACFGTTKYCHAWLRNAPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQITGATINMQRRSGNVLPPPLDDCTNNSTGNPILNNNAPSNSVCTARSPPSNGINGKHVPLPTSAAWGTQATSCQPPVGGLSYPSGLSKTKIDTVQSTLAFSTAVTGTIQASAAQCDGSRRPTSSDASHNTIPRVKTEFQKPVKQYNSIDSVASAGVKAPASDASSPVPVNLKSELSSRPLSRDSDRGNCNIANTLNSTNITGHPFSSGPEEAVSATNEVIRNLSSEFSSINIGINKPGSPPTDDVLTKSLQIQERSQYDVDRFEDTITTNVAGKISISDNSGFNSTEKGGGILDSQSQVVSDTAEIEDDVTSFDNQRLKDPEVCLSYLPKTTNFLHVSKLSSPCLMQHEPRNTVNAGSLSSDDIVRDESILHSSSMLCNGYPEKLISGSSNGLLNNERNRQSLGRLVGETVNAGCDPAIDKGESSIISNILSMDFDPWDDSLTSPHNIVKLLGDNTDDQPCPLKKSSSWKIQSNNQSRFSFARQEESEIQTSDVHSSYGVSQQQVKSHTLNQDLAERDFYMDKLGVANGFPTSNFDEAENLGSVHSISSSNKLSAISRAQVSAPPGFSIPSRLPPPGFSSHERSEQTFDSISGNSLLDHSSFLRNSHQTPSAGNIGGTGDIEFMDPAILAVGKGRLQGAQNSQSLDMRSNFMPQLNYFENEARLQLLMQRSLTQQQNLRFSEIGNNFSQLGDSYGISSRLDQSQVSNLAPFSQLSLQQSTNAILSNGQWNGWNEVQSGNGLGVAELLRNERLGFNKFYSGYDDSKYRMPNSGDLYNRTFGM 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03529 1051 Gene3D - 111 192 IPR012677 -
Car06g03529 1051 MobiDBLite consensus disorder prediction 436 483 - -
Car06g03529 1051 SUPERFAMILY RING/U-box 3 66 - -
Car06g03529 1051 MobiDBLite consensus disorder prediction 835 858 - -
Car06g03529 1051 SMART rrm2_1 111 192 IPR003954 GO:0003676
Car06g03529 1051 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Car06g03529 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Car06g03529 1051 MobiDBLite consensus disorder prediction 428 483 - -
Car06g03529 1051 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Car06g03529 1051 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 215 1051 - -
Car06g03529 1051 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 191 - -
Car06g03529 1051 CDD RRM_CNOT4 105 232 IPR034261 -
Car06g03529 1051 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Car06g03529 1051 SMART rrm1_1 111 192 IPR000504 GO:0003723
Car06g03529 1051 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 215 1051 IPR039780 GO:0004842|GO:0030014
Car06g03529 1051 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 191 IPR039780 GO:0004842|GO:0030014
Car06g03529 1051 MobiDBLite consensus disorder prediction 384 408 - -
Car06g03529 1051 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 193 IPR000504 GO:0003723
Car06g03529 1051 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Car06g03529 1051 Pfam RING/Ubox like zinc-binding domain 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03529 Car-Chr6 66350567 66358655 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03529 K10643 - gmx:100813427 1522.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03529 06 66350567 66358655 Car06g03529 06 66350567 66358655 ECH
Car06g03529 06 66350567 66358655 Car01g02465 01 50371763 50383787 PCT