Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02465 ATGAGTGATGAAGGAGAAAGGACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAGCAATTGAGACCATGCAAATGCGGCTACCAGATATGTGTCTGGTGTTGGCATCACATAATGGACATGGCAGAGAAGGACGACACAGAGGGACGGTGCCCTGCATGTCGCTCTCCATACGATAAGGAAAAGATTGTCGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGTTCGTATGGATAGAAAGATGAAGAGCCAGAAGGCGAAGTCTAAATCATCTGAAGGACGGAAGCAGCTCAGCAGTGTTCGAGTTATTCAGAGGAATCTTGTTTACATAGTGGGATTGCCTCTCAATCTGGCTGATGAAGATTTTCTCCAGCACCGTGAGTATTTTGGTCAGTATGGGACAGTCTTGAAAGTGTCAATGTCTCGGACGGCAGCTGGTGTTGTTCAGCAGTTTCCAAACAATACATGTAGTGTATATATTACTTATTCAAAGGAAGAAGAAGCTATTCGATGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACAACTAAGTATTGTCATGCATGGCTCAGAAACACGCCTTGCAGCAATCCAGATTGTGTATATCTGCATGAGATTGGCTCTGAAGAAGACAGTTTTACAAAAGATGAAATAGTTTCAGCTTACACTAGAAGTCGTGTTCAGCAAGTTACCGGTGTTGCAAGCAACACGGAACGGCGGTCAGGGAATGTATTGCCTCCTCCATTGGATGATTACATGAGCAACACTTCAGGCAAACCCATTGCGAAAAATTCTTTAAGTAACTCTGTTAGCACCGTAAAAGGTTCGCCTCCTGATGGAAGTCCTGCAAAGCTTATGGCTCCTGCATGGGGTTTGCGGACTACAAATTGTCAGCCAGCTGCTGGTGGTCTATTATGTCCAAACGGACTGTCGAAGCCCAAGCCTGATTCAATCAGCAGCTCACTACCCTTTTCCTCGGCTGTTGCAGGCCCAATTCAAGCTTCATTGCATAGTGAAACAATAGAGAGGCCACTGTCAAGTGATGGGTGTCATAGTATACTGCCTGAAGTGAAAAATAATTGTATAGATGTTGTGGCAGGTGCTGATGAAAAAACTTTGGCTTCTGATGCGCCTGTGAATTTTAACAGCCAGTTCCCTTCTATACCATTAGCCAGAGAAAGTGATAGAGGGGGTTGTACAACATCAAGCACAACGAATTCTATTGACATCACAACAAGTTCAAATGGCAGCTTTAGTCCTGAGGAAGCAATTATTGTTACCAATGAAGGGATTCAAAATTTGTCCTATGAGTTGTCCTCTGTTGACCTTGATAGAAATGCCCAAAATGAACATTACAACATAACCAAACCCAGCAGCCCACCTACTGATTTTGTATTGGTTAAGCCTATGCAATCTCAAGGATCACAACATAATGTTGAAAAATTTAGAGATGTAATTATAACAAATGCAGCCAGTAAATCCTCTGTATTGGATAACGAGTTTTATAATTCAAAGGAACGATATGATTTGAAATTGGATTCTCAATCTCAGGTAGCATCAGGTTATGCTGAAGTAGATGATGATGATGTGACATCTTTCGATAACCAGAGACTTAAGGATCCAGAAGTTGTTTGTCATTCTTATTCGCCTTTCCTTCGTGTGTCAAATAATTATAATCCTCATCCTCTGCAGCATGGTGATCCTTGTACTTTTGTAAATTCCGGTTCTTTAGCCACAAATAATGTAGTTGGGGATGATCCAAAAGCATTATGCAATGGATATCCTGAGAAATTGGTCAGCACCAACTCTTACAGGTTGCTTCATGATGAAAGGAATGATAATAACATAGGAAGATTAGTTAGCGAAGCAGTTAATATTGGAAGTGATGCCTCTACAGATAAGGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGAGTTTGATCCCTGGGATGACTCACTAATATCACCCCATAATTTGGCCAAGTTGTTGAGTGACAATACTGACAATCAGAATGGTCTGCTAAAGAAATCTAGTTCTTGTAATGTCCAAACCAATCAATCAAGATTTTCTTTTGCAAGACAAGACGAATCCAAAATCCAAGCCTTTGATTTGAACCCATCGCATGGTGCCAACCAACAGTTTCTCAAAAGTCGCTCACTCATCCGAGATTTTGTGGAAACAACAGACGTGTCTTTGGACAAAATGGGTATTGCAAATGGCTTTCCTGTTAATAAAGTTGAGGAATATGAGAATCTAGGCAGTGGTCATTTTATTGCTTCTAATAATCTTTCTGCTGTTTCCAAAGCACAAATTTCAGCGCCCCCAGGATTTTCAGAGCCAAGCAGGCCACCACCTCCCGGTTTTTCTTCTCATGAGAGAATGGCACAGGCTTTTGACTCAATTTCTGGGAATTCATTGCTTGACCCTTCTTTCTTACCGAGAAATTCATATCAGGCACCATCAACTGGGAATTTTGGAGGTGCAGGAGACATTGAGTTTATGGATCCCGCTATTTTGGCAGTTGGTGAGGGGAGATTTCACGGTGCGCTAAACAGCCCAATGCTAGACATACGTTCCAATTACACCCCACAATTAAATTACCTTGAGAATGAGGCCAGACTTCAGTTATTGATGCAAAGATCTCTCCCGCCACAACAAAACCACCGATTTTCAGAATTTGGGAACAATTTTTCTCAGCTTAGTAATTCTTATGGCATTTCTTCACGGATAGATCAATTACAAGTCGGTAATCTTACTTCATTCCCTCAACTGTCTCTCCAGCAGTCTAGAAATGCTGTCTTGTCAAATGGCAATTGGGATGGGTGGAATGAAATGCAGAATGGAAATAATATAGGAATGGCTGAGCTTTTGAGAAACGAAAGGCTTGGATTTAACAAGTTTTATAGAGGATATGATGATTCAAAGTACCGGATGCCAAATTCTGGGGATTTATACAACAGGACATTTGGGATTTGA 3018 0.4139 MSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAVRMDRKMKSQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEDFLQHREYFGQYGTVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNTPCSNPDCVYLHEIGSEEDSFTKDEIVSAYTRSRVQQVTGVASNTERRSGNVLPPPLDDYMSNTSGKPIAKNSLSNSVSTVKGSPPDGSPAKLMAPAWGLRTTNCQPAAGGLLCPNGLSKPKPDSISSSLPFSSAVAGPIQASLHSETIERPLSSDGCHSILPEVKNNCIDVVAGADEKTLASDAPVNFNSQFPSIPLARESDRGGCTTSSTTNSIDITTSSNGSFSPEEAIIVTNEGIQNLSYELSSVDLDRNAQNEHYNITKPSSPPTDFVLVKPMQSQGSQHNVEKFRDVIITNAASKSSVLDNEFYNSKERYDLKLDSQSQVASGYAEVDDDDVTSFDNQRLKDPEVVCHSYSPFLRVSNNYNPHPLQHGDPCTFVNSGSLATNNVVGDDPKALCNGYPEKLVSTNSYRLLHDERNDNNIGRLVSEAVNIGSDASTDKGESSIISNILSMEFDPWDDSLISPHNLAKLLSDNTDNQNGLLKKSSSCNVQTNQSRFSFARQDESKIQAFDLNPSHGANQQFLKSRSLIRDFVETTDVSLDKMGIANGFPVNKVEEYENLGSGHFIASNNLSAVSKAQISAPPGFSEPSRPPPPGFSSHERMAQAFDSISGNSLLDPSFLPRNSYQAPSTGNFGGAGDIEFMDPAILAVGEGRFHGALNSPMLDIRSNYTPQLNYLENEARLQLLMQRSLPPQQNHRFSEFGNNFSQLSNSYGISSRIDQLQVGNLTSFPQLSLQQSRNAVLSNGNWDGWNEMQNGNNIGMAELLRNERLGFNKFYRGYDDSKYRMPNSGDLYNRTFGI 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02465 1005 MobiDBLite consensus disorder prediction 242 266 - -
Car01g02465 1005 SUPERFAMILY RNA-binding domain, RBD 103 189 IPR035979 GO:0003676
Car01g02465 1005 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 195 IPR000504 GO:0003723
Car01g02465 1005 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1005 - -
Car01g02465 1005 MobiDBLite consensus disorder prediction 275 294 - -
Car01g02465 1005 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Car01g02465 1005 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Car01g02465 1005 SMART rrm2_1 110 191 IPR003954 GO:0003676
Car01g02465 1005 SUPERFAMILY RING/U-box 3 66 - -
Car01g02465 1005 MobiDBLite consensus disorder prediction 408 428 - -
Car01g02465 1005 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1005 IPR039780 GO:0004842|GO:0030014
Car01g02465 1005 MobiDBLite consensus disorder prediction 785 805 - -
Car01g02465 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
Car01g02465 1005 MobiDBLite consensus disorder prediction 400 428 - -
Car01g02465 1005 Gene3D - 110 191 IPR012677 -
Car01g02465 1005 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Car01g02465 1005 CDD RRM_CNOT4 104 203 IPR034261 -
Car01g02465 1005 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02465 Car-Chr1 50371763 50383787 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02465 K10643 - gmx:100796804 1402.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02465 01 50371763 50383787 Car01g02465 01 50371763 50383787 ECH
Car06g03529 06 66350567 66358655 Car01g02465 01 50371763 50383787 PCT