Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03488 ATGCTAAATCGTAGACGACTCGTCGTTTTCctctcactcaccactcttctcctactctcctcattctctcttactctctGCAAAAAATCTTCCCAAAacgacaacgacgacgacgaagaTCTCAGCTTCCTCGAGGAACCCGAAGACGCCTCCACTTCACACCAAGCCCACGCCAATTTACCAGATCTCGATCAATTcggcgatgacgaagaagaagacgacgacggcgatgacttcggcgacTTCTCTGGCTTCGACCCTCATTCCGATGAAGAGTTCAAGGAACCAGAGGTTGATGAAAAAGACGTCGTCGTTTTGAAGGAGAGAAACTTCACCACAGTAATTGAAAATAACCGTTTCGTGATGGTTGAATTCTACGCCCCGTGGTGCGGTCACTGTCAAGCATTGGCGCCGGAGTACGCCGCCGCTGCTACGGAGTTGAAAAACGACGGTGTCGTTTTGGCTAAGGTGGATGCTTCGCAGGAAAATGAATTGGCTCATGAGTATGATGTTCAGGGTTTTCCCACTGTTTACTTCTTCATCGATGGGGTTCATAAACCTTACAATGGCCAAAGAACAAAAGATGGTCTAGTGACATGGATTAAGAAGAAGATAGGACCTGGCGTATACAACATAACTACTTTGGATGATGCTGAACGTATATTGACTTCTGAAACTAAAGTCGTTTTGGGTTTCCTCGACTCCTTAGTTGGTTCTGAGAGTGACGAGCTAGCTGCAGCATCAAAACTTGAGGATGGTGTCAATTTTTACCAAACTGTGATTCCTAATGTGGCTAAGCTTTTCCATATTGACCCAAATGCCAAGCGCCCTGCTTTGGTCTTGCTCAAGAAAGAGGAGGAGAAACTCAACCATTTTGATGGCCAATTTGTAAAAGCTGCAATAGCTGACTTTGTATCCTCCAACAAGCTTCCGTTGGTCACAACTTTTACAAGGGAAACTGGCCCAGTAATTTTTGAAAGTCCAATCAAGAAACAGTTGTTGCTGTTTGTGACTTCAAATGATACAGAGAACTTCATTCCAGTATTTCAAGAAGCAGCAAAGCTTTTCAAGGGGAAGCTGATCTTTGTTCATGTGCAATTGGATAATGAAGATGTTGGAAAGCCTGTTGCAGACTATTTTGGTATCTCCGGAAATGCTCCCAAAGTACTTGCATTCACAGGAAATGATGATGGCAGAAAATTTTTGCTTGGTGGAGAGGTGACCGTTGACAATATTAAGGCATTCGGGGAAGATTTTCTTGAAAACAAGCTAAAACCTTTCCTAAAGTCAGATCCACTTCCTGAAAGCAACGATGGTGATGTGAAAATAGTTGTTGGCAATAGCTTCGATGATATTGTCTTGGATGAGTCGAAGGATGTTCTACTTGAGATTTATGCTCCCTGGTGTGGCCATTGCCAAGCCTTGGAACCAACATACAACAAGCTTGCAAAACATCTTCGTAGTATTGATTCTATTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCTAGGGCAAAGTCTGATGGGTTCCCCACTCTTCTTTTCTACCCAGCAGGAAAAAAGAGTTCCGACCCTATTACTGTTGATGTGGATCGTACAGTGGTGGCGTTCTATAAGTTTCTCAAGAAACACGCGTCAATCCCTTTCCAACTCACAAAACCAACCTCTACTTCTAAAACCGACGATAGTGGGAGTTCTGACATCAAGCAGAGTGAGAGTAGCAGCACAGATGTGAAGGATGAATTGTGA 1755 0.404 MLNRRRLVVFLSLTTLLLLSSFSLTLCKKSSQNDNDDDEDLSFLEEPEDASTSHQAHANLPDLDQFGDDEEEDDDGDDFGDFSGFDPHSDEEFKEPEVDEKDVVVLKERNFTTVIENNRFVMVEFYAPWCGHCQALAPEYAAAATELKNDGVVLAKVDASQENELAHEYDVQGFPTVYFFIDGVHKPYNGQRTKDGLVTWIKKKIGPGVYNITTLDDAERILTSETKVVLGFLDSLVGSESDELAAASKLEDGVNFYQTVIPNVAKLFHIDPNAKRPALVLLKKEEEKLNHFDGQFVKAAIADFVSSNKLPLVTTFTRETGPVIFESPIKKQLLLFVTSNDTENFIPVFQEAAKLFKGKLIFVHVQLDNEDVGKPVADYFGISGNAPKVLAFTGNDDGRKFLLGGEVTVDNIKAFGEDFLENKLKPFLKSDPLPESNDGDVKIVVGNSFDDIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLRSIDSIVIAKMDGTTNEHPRAKSDGFPTLLFYPAGKKSSDPITVDVDRTVVAFYKFLKKHASIPFQLTKPTSTSKTDDSGSSDIKQSESSSTDVKDEL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03488 584 Gene3D Glutaredoxin 206 309 - -
Car06g03488 584 Gene3D Glutaredoxin 310 434 - -
Car06g03488 584 CDD PDI_a_PDI_a'_C 441 543 - -
Car06g03488 584 CDD PDI_a_family 104 201 - -
Car06g03488 584 MobiDBLite consensus disorder prediction 81 98 - -
Car06g03488 584 Gene3D Glutaredoxin 91 205 - -
Car06g03488 584 ProSitePatterns Thioredoxin family active site. 122 140 IPR017937 -
Car06g03488 584 ProSiteProfiles Thioredoxin domain profile. 419 548 IPR013766 -
Car06g03488 584 SUPERFAMILY Thioredoxin-like 209 320 IPR036249 -
Car06g03488 584 SUPERFAMILY Thioredoxin-like 96 206 IPR036249 -
Car06g03488 584 TIGRFAM ER_PDI_fam: protein disulfide isomerase 101 584 IPR005792 GO:0003756
Car06g03488 584 TIGRFAM pdi_dom: protein disulfide-isomerase domain 107 204 IPR005788 GO:0003756
Car06g03488 584 Pfam Thioredoxin 103 203 IPR013766 -
Car06g03488 584 Pfam Thioredoxin 441 526 IPR013766 -
Car06g03488 584 PRINTS Thioredoxin family signature 121 129 - -
Car06g03488 584 PRINTS Thioredoxin family signature 129 138 - -
Car06g03488 584 PRINTS Thioredoxin family signature 170 181 - -
Car06g03488 584 ProSiteProfiles Thioredoxin domain profile. 84 206 IPR013766 -
Car06g03488 584 CDD PDI_b_family 209 308 - -
Car06g03488 584 MobiDBLite consensus disorder prediction 554 584 - -
Car06g03488 584 MobiDBLite consensus disorder prediction 554 574 - -
Car06g03488 584 ProSitePatterns Thioredoxin family active site. 461 479 IPR017937 -
Car06g03488 584 MobiDBLite consensus disorder prediction 65 80 - -
Car06g03488 584 CDD PDI_b'_family 324 420 - -
Car06g03488 584 PANTHER PROTEIN DISULFIDE-ISOMERASE 2 576 - -
Car06g03488 584 Gene3D Glutaredoxin 435 549 - -
Car06g03488 584 SUPERFAMILY Thioredoxin-like 436 548 IPR036249 -
Car06g03488 584 Pfam Thioredoxin-like domain 245 415 - -
Car06g03488 584 SUPERFAMILY Thioredoxin-like 308 438 IPR036249 -
Car06g03488 584 PANTHER PROTEIN DISULFIDE ISOMERASE 2 576 - -
Car06g03488 584 MobiDBLite consensus disorder prediction 30 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03488 Car-Chr6 65748316 65753633 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03488 K09580 - gmx:100785630 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03488 06 65748316 65753633 Car06g03488 06 65748316 65753633 ECH
Car06g03488 06 65748316 65753633 Car01g02494 01 50649708 50653515 ECH
Car01g02494 01 50649708 50653515 Car06g03488 06 65748316 65753633 PCT