Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03409 ATGATAACCGTCGCTATTCTCTTCGCCGTCACGCTTCTCTCGGCGGCTGCTTCTCCGGTGACTCTAACACTTGAAAGAGCTTTTCCTTCCAATCACGGAGTGGAGTTGAATGAACTCAAAGCATTGGATTCTTTCAGACATCGCAGTAGATTTTTGCAGTCTACTAATTATGTTGTTGATTTTCCTGTTAAAGGATCCTTCGATACCACTAAAGCTGGgctctattttacaaaggtgaatttgggtactcctccaagagaattttatgtacagattgacactggtagtgatgttctttgggttagttgtgcttcctgcaatggttgtcctcaaacaagtggactccaaATTCAGCTCAATTACTTCGATCCCAGGAGTTCATCGACGTCTTCATTGATCTCTTGTTCTGATCAAAGGTGCAAGAATGGAGTCCAGTCATCAGATAGCAGCTGTTCTGGTCAGAACAACCAATGCACTTATGTATTCCAGTATGGAGATGGTAGCGGCACATCCGGCTATTATGTGTCGGACTTGATGCATTTTGCTAGTATTTCTGAGGAATCTTTGTTGTCAAATTCTTCAGCGCATGTGGTTTTTGGttgtagcaaccagcaaacaggggacttgacaaagtctgatagagcaattgatggcatatttggatttgggcaacagggcatgtcagtaatttcccaactctcttcacaaggaatagcaccaagagtgttctcccattgcctgaaaggagatagtagtggtggcggcttattggttcttggtgagattgtggagccaaacatagtttatagtcccctcgttccgtcacagccgcattataatctaaatctgctgagcatctctgtcaatggccaaattgtaccaattgattctgctatttttgctacatcaaacaatagaggtaccattattgattctggaacaactttggcatacattgcagaagaggcttacactccctttattaatgcaCTTACAGCTGCTATTCCACAATCTGTGCACACTGTTCTTTCCACAGGAAATCAGTGTTACTTGATAACCACCAGGTTAAGTGGAACTTTTCATAAATCATAG 1092 0.2234 MITVAILFAVTLLSAAASPVTLTLERAFPSNHGVELNELKALDSFRHRSRFLQSTNYVVDFPVKGSFDTTKAGLYFTKVNLGTPPREFYVQIDTGSDVLWVSCASCNGCPQTSGLQIQLNYFDPRSSSTSSLISCSDQRCKNGVQSSDSSCSGQNNQCTYVFQYGDGSGTSGYYVSDLMHFASISEESLLSNSSAHVVFGCSNQQTGDLTKSDRAIDGIFGFGQQGMSVISQLSSQGIAPRVFSHCLKGDSSGGGLLVLGEIVEPNIVYSPLVPSQPHYNLNLLSISVNGQIVPIDSAIFATSNNRGTIIDSGTTLAYIAEEAYTPFINALTAAIPQSVHTVLSTGNQCYLITTRLSGTFHKS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03409 363 Gene3D Acid Proteases 261 361 IPR021109 -
Car06g03409 363 CDD pepsin_A_like_plant 75 324 IPR034161 -
Car06g03409 363 Pfam Xylanase inhibitor N-terminal 75 260 IPR032861 -
Car06g03409 363 Gene3D Acid Proteases 48 260 IPR021109 -
Car06g03409 363 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 357 - -
Car06g03409 363 SUPERFAMILY Acid proteases 72 356 IPR021109 -
Car06g03409 363 Pfam Xylanase inhibitor C-terminal 278 351 IPR032799 -
Car06g03409 363 PANTHER ASPARTYL PROTEASES 5 357 IPR001461 GO:0004190|GO:0006508
Car06g03409 363 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Car06g03409 363 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Car06g03409 363 ProSiteProfiles Peptidase family A1 domain profile. 75 363 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03409 Car-Chr6 63963253 63968295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03409 51 331 Miscellaneous Gene Families AT1G44130 28.169 1.82e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03409 - K00924 gmx:100789004 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02188 01 47634253 47639019 Car06g03409 06 63963253 63968295 PCT