Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02188 ATGGCGTCTCTTTTTATCGTCATCGTCGTGTTACTACTAACGGCGACGGTTATTTCTGGATCGCCGGCGACTCTGACGTTGGAAAGAGCGTTTCCGTCGAATCACGGAGTGGAATTGAATCAGTTGAGAGCTAGAGACTTGTTCAGGCATCGTAGAATTTTGCAGTCTTCGAACGGCGTCGTTGATTTCCCTGTTCAAGGAACCTTCGATCCCTTCCAAGTCGGgctctattttacaaaggtgcagttgggtactcctccagtagaattttatgtgcagattgatactggaagtgatgttctttgggttagttgcagctcctgcagtggatgtccacagacaagtggactacagATTGAACTCGATTTTTTTGACCCCGAGCGTTCATCAACGTCGTCTTTAATCTCTTGTTCCGACCGGAGGTGCAACAGTGGAATACAATCATCAGATGCAAGTTGTTCCACTCAGAACAACCAATGCTCTTACACTTTCCAGTATGGAGATGGTAGTGGAACATCAGGCTATTATGTGTCAGATATGATGCATTTGAATACTATTTTCGAGGGATCTGTGACTGCAAATTCTACAGCTCCTGTAGTTTTCGGttgtagtaaccggcagagtggggacttgacaaagtctgacagagcagttgatggtatattcggattcgggcagcaggaaatgtctgtcatctctcagctctcctcacaagggattgctcctagagtattctcacattgtcttaaaggagatagcactggtgggggagtattggttcttggcgagattgtagagcctaacatagtttatactcctcttgttccatcacagcctcattacaacttaaatctacagagcatctctgtcaatggccagatgttgcaaatcgatgcatcagtttttgcaacatcaaacaacagaggtaccattgttgattctgggacaacattggcataccttgcagaagaggcttatgatccctttgtcaatgcgATTACGGCTGCAATCCCACAATCTGTACACACTGTTGTTTCAAGGGGAAATCAGTGTTTCTTAATTACTAACAGtgtcgctgacaattttcctcaagtaagtctgaactttgctggtggtgcatctctggttttaagacctcaggactaccttatacggcagagttctattgtaagtatTCAAGTCTCAATTTCTCTTTCTTTTTCAATTTTCCGAGGACTGATTTGGATTTTGTGA 1233 0.2141 MASLFIVIVVLLLTATVISGSPATLTLERAFPSNHGVELNQLRARDLFRHRRILQSSNGVVDFPVQGTFDPFQVGLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCSSCSGCPQTSGLQIELDFFDPERSSTSSLISCSDRRCNSGIQSSDASCSTQNNQCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGSVTANSTAPVVFGCSNRQSGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDSTGGGVLVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQMLQIDASVFATSNNRGTIVDSGTTLAYLAEEAYDPFVNAITAAIPQSVHTVVSRGNQCFLITNSVADNFPQVSLNFAGGASLVLRPQDYLIRQSSIVSIQVSISLSFSIFRGLIWIL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02188 410 Pfam Xylanase inhibitor C-terminal 280 387 IPR032799 -
Car01g02188 410 PANTHER ASPARTYL PROTEASES 4 390 IPR001461 GO:0004190|GO:0006508
Car01g02188 410 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Car01g02188 410 CDD pepsin_A_like_plant 77 384 IPR034161 -
Car01g02188 410 ProSiteProfiles Peptidase family A1 domain profile. 77 410 IPR033121 -
Car01g02188 410 Gene3D Acid Proteases 264 397 IPR021109 -
Car01g02188 410 SUPERFAMILY Acid proteases 72 387 IPR021109 -
Car01g02188 410 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Car01g02188 410 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Car01g02188 410 Gene3D Acid Proteases 53 263 IPR021109 -
Car01g02188 410 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 4 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02188 Car-Chr1 47634253 47639019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02188 51 384 Miscellaneous Gene Families AT1G44130 29.226 6.52e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02188 - K00924 gmx:100795803 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02188 01 47634253 47639019 Car06g03409 06 63963253 63968295 PCT