Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03222 ATGTCTTCAAAAATGAGTTGGGCTTTTGGATTGGTTGTGTGTCTTATGTTTGTGTTGGGTGTGTCTTTGTCTACTTCTTCCAAGTTTGATGAACTCTTCCAACCAAGTTGGGCTTTTGATCATTTTGTTTATGAAGGAGATCTCCTTAAACTCAAACTTGATAATTATTCTGGTGCTGGATTTGGATCCAAAAACAAGTATATGTTTGGGAAAGTATCCATCCAGCTTAAGCTTGTTGAAGGTGACTCTGCTGGAACTGTTACTGCTTTCTATATGTCATCGGACGGTCCAAACCACAACGAGTTTGATTTTGAATTTCTAGGCAACAGCACAGGGGAACCTTATTCTGTGCAAACTAATGTGTATGTGAATGGAATTGGTAACCGTGAGCAGAGACTCGACCTTTGGTTCGATCCTACAAAGGAATTTCACTCTTACTCTATTTTCTGGAATCAACGACAAGTTGTATTTTTAGTGGATGAAACACCAATAAGAGTACACACAAACATGGAACACAAAGGAATTCCTTTTCCAAAGGACCAACCAATGGGTGTATACAGCTCAATATGGAATGCAGATGATTGGGCCACACAAGGAGGAAGAGTGAAAACAGATTGGAGTCATGCACCTTTTATTGCAACATATAAAGCCTTTGAAATCAATGCTTGTGAGTGTCCAATGTCAGTGGCTGCAATGGATAATACAAAGAGGTGTAGTAGTAGTAGTGATGATAAGAAGTTTTGGTGGGATGAGCCTAATTTGTCTGTACTTAATTTGCATCAATCTCATCAGCTTATGTGGGTCAGGGCTAAACATATGGTTTATGATTATTGTAATGATGTTAGTAGGTTTCCAATTACTCCTCTTGAGTGTGTCCATCATCGTCATAACTAG 894 0.3893 MSSKMSWAFGLVVCLMFVLGVSLSTSSKFDELFQPSWAFDHFVYEGDLLKLKLDNYSGAGFGSKNKYMFGKVSIQLKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNSTGEPYSVQTNVYVNGIGNREQRLDLWFDPTKEFHSYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPFPKDQPMGVYSSIWNADDWATQGGRVKTDWSHAPFIATYKAFEINACECPMSVAAMDNTKRCSSSSDDKKFWWDEPNLSVLNLHQSHQLMWVRAKHMVYDYCNDVSRFPITPLECVHHRHN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03222 297 CDD GH16_XET 25 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Car06g03222 297 PIRSF EndGlu_transf 1 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Car06g03222 297 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 215 IPR000757 GO:0004553|GO:0005975
Car06g03222 297 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 295 IPR013320 -
Car06g03222 297 PRINTS Glycosyl hydrolase family 16 signature 59 77 IPR008264 GO:0004553|GO:0005975
Car06g03222 297 PRINTS Glycosyl hydrolase family 16 signature 117 130 IPR008264 GO:0004553|GO:0005975
Car06g03222 297 PRINTS Glycosyl hydrolase family 16 signature 135 152 IPR008264 GO:0004553|GO:0005975
Car06g03222 297 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 245 291 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Car06g03222 297 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 5 295 IPR044791 GO:0004553
Car06g03222 297 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 5 295 - -
Car06g03222 297 Pfam Glycosyl hydrolases family 16 32 207 IPR000757 GO:0004553|GO:0005975
Car06g03222 297 Gene3D - 17 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03222 Car-Chr6 59611881 59615448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03222 59 296 Glycoside Hydrolase AT4G03210 75.210 3.02e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03222 K08235 - gmx:100785982 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03222 06 59611881 59615448 Car01g02340 01 49208084 49210971 PCT