Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02340 ATGCCTAAGATGTCTTGTTTCTTGGGACTTTATGTGTGTCTTTTGTTTATTGGGTTGGTTGCTTCTTCGAAGTTTGAGGAACTCTTCCAACCCAGTTGGGCTATGGACCATTTTGTCCATGAAGGAGATTTGCTTAAACTCAAACTTGACAATTTTTCTGGTGCTGGATTTGGATCTAAGAGCAAATATATGTTTGGGAAAGTGACTGTGCAGCTTAAACTTGTGGAGGGTGACTCTGCTGGAACCGTTACTGCTTTCTATatgtcatcagaagggccaaatcacaacgaatttgattttgagttttTGGGCAATACTAGTGGTGAACCTTACTCGGTCCAAACTAATGTGTATGTGAATGGAGTTGGTAATAGGGAGCAGAGACTTAATCTATGGTTTGACCCCTCTAAGGACTTCCACACCTACTCTATCTTCTGGAACCAGCGTCAAGTTGTGTTCCTTGTGGATGAGACACCAATAAGGGTACACACAAATTTGGAACACAAAGGAATTCCTTTCCCAAAAGACCAAGCAATGGGTGTATACAGTTCAATATGGAATGCTGATGATTGGGCCACACAAGGTGGTCGTGTGAAAACAGATTGGAGTCATGCACCTTTCGTTGCTACATACAAAAACTTTGAAATCAATGCTTGTGAATGTCCAGTGGCAGTGACATCAACAAATAATGCTAAAAATTGTAGTAGTAGTGAGGATAAAAAATATTGGTGGGATGAACCTATGATGTCTGAGCTCACCTTGCATCAAAGCCACCAACTTATTTGGGTTAGGGCTAATCATATGGTCTATGATTATTGTGCGGACACAGCTAGGTTCCCGGTCATTCCTGCCGAATGTGTTCGTCATCATCACTAG 876 0.3973 MPKMSCFLGLYVCLLFIGLVASSKFEELFQPSWAMDHFVHEGDLLKLKLDNFSGAGFGSKSKYMFGKVTVQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTSGEPYSVQTNVYVNGVGNREQRLNLWFDPSKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKNFEINACECPVAVTSTNNAKNCSSSEDKKYWWDEPMMSELTLHQSHQLIWVRANHMVYDYCADTARFPVIPAECVRHHH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02340 291 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 289 IPR013320 -
Car01g02340 291 PRINTS Glycosyl hydrolase family 16 signature 55 73 IPR008264 GO:0004553|GO:0005975
Car01g02340 291 PRINTS Glycosyl hydrolase family 16 signature 113 126 IPR008264 GO:0004553|GO:0005975
Car01g02340 291 PRINTS Glycosyl hydrolase family 16 signature 131 148 IPR008264 GO:0004553|GO:0005975
Car01g02340 291 Pfam Glycosyl hydrolases family 16 27 203 IPR000757 GO:0004553|GO:0005975
Car01g02340 291 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 7 288 - -
Car01g02340 291 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 288 IPR044791 GO:0004553
Car01g02340 291 PIRSF EndGlu_transf 2 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Car01g02340 291 Gene3D - 16 291 - -
Car01g02340 291 CDD GH16_XET 21 286 IPR016455 GO:0010411|GO:0016762|GO:0042546
Car01g02340 291 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 239 286 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Car01g02340 291 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 211 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02340 Car-Chr1 49208084 49210971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02340 55 291 Glycoside Hydrolase AT4G03210 75.949 9.41e-141 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02340 K08235 - gmx:100801567 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02340 01 49208084 49210971 Car01g02340 01 49208084 49210971 ECH
Car06g03222 06 59611881 59615448 Car01g02340 01 49208084 49210971 PCT