Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02442 ATGATGGATAATTCTTCACCAACATCTCTCTCATCACCTCTCTCTCTCCAAAACCAAAAAACACCCTTTCAAGACCCACCACAAGCATCACCAAAACCATACAAAAAAACCTTAATCTCATCTCTAATGGGTACTACCACCAATCTAAGAACCTCTTCCTTTGAAGAAGACAATTACTTTGTTACCCTTCTCAAATCCTCAGAGAAAAAAGCACTTCAAGAACTAAAAAGAAAACTCATTGAAACAACAACAAAAACTTCTTCAAATGGAGTTGAACATGAAATTTCAATGTGGGGTGTTTCTCTTGTTAGTGAAGATGATAGAGCTGATGTAATACTCTTGAAGTTTCTAAGAGCAAGAGATTTCAAAGTTAATGAAGCACTAATCATGATTCTAAAGTGTTTAACTTGGAGGAAAGAGTTTTGTGCTGATAACATAGTTGATGAAGATTTGAGTGATTTCAAAGAGCTTGAAGGTGTGATAGCTTATATGCAAGGACATGATAGAGAGGGACATCCTGTGTGTTACAATGCTTATGGTGTTTTTAAGGATAAGGATATGTATGAAAGGATTTTTGGAGATGAAGAGAAGCTTAAGAAGTTTCTTAGGTGGAGAATTCAAGTTCTTGAAAGAGGGATTAAGCTTCTTCATTTTAAGGCTGGTGGTGTTAATTCTCTTATTCAAGTTACTGACCTTAAAGATATGCCTAAAAGAGAGCTTAGGGTTGCTTCTAACCATATCCTCTCATTGTTTCAAGATAACTACCCAGAAATGGTTGCCAAAAAGATTTTCATCAATGTGCCATGGTACTTCAGCATGTTGTATTCAATGTTTAGTCCTTTTTTAACTCAAAGGACTAAAAGCAAATTTGTGATCTCAAAGGAAGGAAATGCTGCAGAGACACTCTACAAATTCATTAGACCTGAAGATATTCCTGTTCAATATGGAGGACTGAGTAGGGTCAGTGATTTGCAAAATGGTCCCCCAAAACCGGCCTCTGAATTCACTGTCAAAGGAGGGGAGAAAGTGAATATACAAATAGAAGGAATTGAGGGGGGTGCAACTATCACTTGGGACATTGTTGTAGGAGGTTGGGACTTAGAATACAGTGCTGAGTTTGTTCCAAATGCTGAAGGAAGCTACACTATAGCAGTTGAGAAGCCAAGAAAAATTGGAGCCTCAGAAGAAGCAATTCACAACTCATTCACATCAAAAGGATCTGGAAAAATGATACTCTCGGTTGATAACACTTCGTCGAGGAAGAAAAAAGTCGCTGCTTATCGATATGTTGTCCGCAAATGCTGCACCACTTGA 1314 0.3775 MMDNSSPTSLSSPLSLQNQKTPFQDPPQASPKPYKKTLISSLMGTTTNLRTSSFEEDNYFVTLLKSSEKKALQELKRKLIETTTKTSSNGVEHEISMWGVSLVSEDDRADVILLKFLRARDFKVNEALIMILKCLTWRKEFCADNIVDEDLSDFKELEGVIAYMQGHDREGHPVCYNAYGVFKDKDMYERIFGDEEKLKKFLRWRIQVLERGIKLLHFKAGGVNSLIQVTDLKDMPKRELRVASNHILSLFQDNYPEMVAKKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIPVQYGGLSRVSDLQNGPPKPASEFTVKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKIGASEEAIHNSFTSKGSGKMILSVDNTSSRKKKVAAYRYVVRKCCTT 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02442 437 Gene3D - 146 328 IPR036865 -
Car06g02442 437 PANTHER PATELLIN-6 19 435 - -
Car06g02442 437 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 334 431 IPR036598 -
Car06g02442 437 Gene3D GOLD domain 329 431 - -
Car06g02442 437 MobiDBLite consensus disorder prediction 1 25 - -
Car06g02442 437 PANTHER PATELLIN-1 19 435 IPR044834 GO:0008289
Car06g02442 437 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 148 323 IPR001251 -
Car06g02442 437 Gene3D - 62 140 - -
Car06g02442 437 SMART sec14_4 156 320 IPR001251 -
Car06g02442 437 Pfam CRAL/TRIO, N-terminal domain 71 132 IPR011074 -
Car06g02442 437 CDD SEC14 151 318 IPR001251 -
Car06g02442 437 ProSiteProfiles GOLD domain profile. 299 433 IPR009038 -
Car06g02442 437 SMART CRAL_TRIO_N_2 109 134 IPR011074 -
Car06g02442 437 SUPERFAMILY CRAL/TRIO domain 156 320 IPR036865 -
Car06g02442 437 MobiDBLite consensus disorder prediction 1 34 - -
Car06g02442 437 SUPERFAMILY CRAL/TRIO N-terminal domain 65 150 IPR036273 -
Car06g02442 437 Pfam CRAL/TRIO domain 158 317 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02442 Car-Chr6 27063319 27067413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02442 113 312 Acyl Lipid Metabolism Gene Families AT1G55840 27.962 1.97e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02442 - - gmx:100809944 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02442 06 27063319 27067413 Car06g02442 06 27063319 27067413 ECH
Car03g01340 03 58398580 58401404 Car06g02442 06 27063319 27067413 PCT