Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01340 ATGCCTAAATTTCATCTGGGTCTCTCTCAAATCCCTCATTCACCATCAATGGAGGATCACTCTTCATCCTCCATGTCCATCCTCAACACACCCTTTTTACTAGACACTCCAAAACAATCTTCCCCAAAACCATACAAAAAAAACTTAGTCACAACATTAATGGAAGCTGCAACCTTCACATCCTCTTCTTTCAAAGAAGATACCTATTTTATTTCCCACCTCAAATCATCAGAGAAGAAAGCATTGCAAGAGTTGAAGAACAAGCTCTTAGCTTCAGATGAAAACAACAAAAATGCTTCCATGTGGGGTGTTTCATTGCTTGGTAATGATAATGATGATGTTGCTGATGTGTTGCTCTTGAAGTTCCTTAGAGCTAGAGACTTTAGAGTCAATGATGCTCTCAACATGCTTGTGAAATGTCTTGCTTGGAGGAAGGAGTTTGGTGCTGATAATGTTGTGGATGAAGAGCTGGGATTTAAAGAGCTTGAAGGTGTTGTAGCTTTTACACATGGGTATGATAGAGAGGGACACCCAGTGTGTTACAATCATTATGGTGTTTTCAAAGATAAGGATATGTATGAGAGGATTTTTGGTGATGAAGAGAAGTTGAAGAACTTTTTGAGGTGGAGGGTTCAAGTTCTTGAGAGAGGAATCAAGCTTTTGCATTTTAAGCCTGGTGGGGTTAATTCTTTGATTCAAGTTACTGATCTTAAGGATATGCCTAAGAGAGAGTTAAGGGCTGTCTCAAATCATATTCTCTCATTGTTTCAAGATAACTATCCTGAAATGGTGGCTCGTAAGATTTTCATCAATGTGCCATGGTACTTTAGCATGTTGTATTCAATGTTCAGCCCATTTCTGACTCAAAGAACTAAGAGCAAGTTTGTGATCTCTAAGGAAGGAAATGCTGCAGAGACACTTTATAAATTTATAAGGCCTGAGAATATTCCTGTTCAATATGGTGGATTGAGTCTACCAAATGAATTTCAAAATGGTCCTCCAAAACCAGCTTCTGAGTTCACTGTTAAAGGTGGAGAAAAAGTGAACATACAAATAGAAGGAGTTGAGGGTGGTGCAACAATCAAGTGGGAGATTGTAGTTGGAGGCTGGGACTTAGAATACAGTGCTGAGTTTGTCCCAAACTCAGAAGGTAGCTACACTATAGCAGTTGAAAAATCAAGGAAGGTTGAAGCATCATCTTTAGCAATTCAAAATTCATTCACATCAAAAGAAGCAGGTAAAATGGTACTCTCAGTTGATAACTCTGCATCTAAGAAGAAAAAAGTTGCTGCTTATCGCTATGTTGTCCGCAAATGCAACAACAACACACAATCTGATATGTTGCAATTAAGCCTCAAATAG 1362 0.3862 MPKFHLGLSQIPHSPSMEDHSSSSMSILNTPFLLDTPKQSSPKPYKKNLVTTLMEAATFTSSSFKEDTYFISHLKSSEKKALQELKNKLLASDENNKNASMWGVSLLGNDNDDVADVLLLKFLRARDFRVNDALNMLVKCLAWRKEFGADNVVDEELGFKELEGVVAFTHGYDREGHPVCYNHYGVFKDKDMYERIFGDEEKLKNFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELRAVSNHILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPENIPVQYGGLSLPNEFQNGPPKPASEFTVKGGEKVNIQIEGVEGGATIKWEIVVGGWDLEYSAEFVPNSEGSYTIAVEKSRKVEASSLAIQNSFTSKEAGKMVLSVDNSASKKKKVAAYRYVVRKCNNNTQSDMLQLSLK 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01340 453 SMART CRAL_TRIO_N_2 115 140 IPR011074 -
Car03g01340 453 SMART sec14_4 161 325 IPR001251 -
Car03g01340 453 PANTHER PATELLIN-1 35 440 IPR044834 GO:0008289
Car03g01340 453 PANTHER PATELLIN-6 35 440 - -
Car03g01340 453 Pfam CRAL/TRIO, N-terminal domain 81 139 IPR011074 -
Car03g01340 453 CDD SEC14 159 323 IPR001251 -
Car03g01340 453 Gene3D - 71 146 - -
Car03g01340 453 SUPERFAMILY CRAL/TRIO domain 160 323 IPR036865 -
Car03g01340 453 MobiDBLite consensus disorder prediction 1 24 - -
Car03g01340 453 Gene3D - 154 331 IPR036865 -
Car03g01340 453 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 170 328 IPR001251 -
Car03g01340 453 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 339 446 IPR036598 -
Car03g01340 453 ProSiteProfiles GOLD domain profile. 304 438 IPR009038 -
Car03g01340 453 Pfam CRAL/TRIO domain 163 322 IPR001251 -
Car03g01340 453 SUPERFAMILY CRAL/TRIO N-terminal domain 70 155 IPR036273 -
Car03g01340 453 Gene3D GOLD domain 332 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01340 Car-Chr3 58398580 58401404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01340 119 317 Acyl Lipid Metabolism Gene Families AT1G55840 29.384 9.11e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01340 - - cam:101508309 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01340 03 58398580 58401404 Car03g01340 03 58398580 58401404 ECH
Car03g01340 03 58398580 58401404 Car06g02442 06 27063319 27067413 PCT