Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02377 ATGTCTAAAACAAATACAACACAAACCAGTTGTTCAACTTCTTTACTTGACCTTCTAACAGAAATGAAGAAGCAATCCAACACAGAACAACAAACCAATTTCCAACCAAAATCACCATCAAACTTCTCCTCTGAATGCTGGTTTGATGATGCATGCATCTTAGACATGGACTACTTTGTAAAAACTTTATCAGGAATCAAAGCAAAAGGCGTCCGAGCCGACTTAATCGGTTCAATCATCACACACTATGCATCAAAATGGCTCCCTGACTTATCAACTGAAAAGGGTCTAACACAATTTGAAGAATCATCACCTGAGAGTGTAACAGCTTCATGGATGAAAAAAAGGTTCTTTGTTGAAACCTTAGTTAATGTTCTACCACCAGAAAAAGATTCAATACCATGTAACTTTCTTCTTAGGCTTTTAAGAACAGCCAACATGGTTAATGTTGATGTAACTTATAAACAAGAGCTTGAGAAGAGAGTTTCATGGCAATTAGATCAAGCTTCATTGAAAGAACTTGTGATTCCTTCTTTTAGTCATACTTGTGGAACACTTTTGGATGTTGAGTTGGTTATTAGGTTGGTTAAGAGGTTTGTTAGTTTGGATAATGAAGGTGCTAAGAGTGGTGCTGCTTTGGTTAAAGTTGCTAAGTTGGTTGATTGTTATCTTGCTGAGGCTGCTGTTGATGCTAATTTGAGTTTGTCTGAGTTTGTTACTCTTGCTGGTGTTCTTCCTAGTCATGCTAGAGCTACTGATGATGGATTGTACAGAGCCATTGATACTTATCTTAAAGCACATTCAAATGTATCAAAGCAAGAAAGGAAAGGTCTATGCAGGTTGATAGATTGCAGAAAACTAACACAAGAAGCATCACTTCATGCTGCTCAAAACGAACGGTTCCCGGTTCGAGCAGTAATTCAAGTCCTTCTCTCGGAACAAACGAAACTCAACCGTCACAACAATCATCAAATGGATTGGAGTGGATCCATAATGAGCATTACAAGAAGTCCAACAAACGGATTTGGATTAGAAGCAGTCCCGACCGCAAGGTGTCTATCGAAGCGCGAAATGAACATTCAACAGATGGAGATAAAGAAACTTAAGGAAGATGTTCATAGGCTGCAAAGTCAGTGCAATACAATGCAAGTTCAAATGGAGAGAATGGTTGAAAAGAAGAAAGGTTTTTTTAAGTGGAGCAAGAGGTTTAGTGTGAATGGTTTCGGTAAAGGAGACGCCGGTGTAGTGGTggagagaagaggaggaggaggagaagaaggagaagaTGGTGATCATGTTGAGTTTGGTGGGAGACAAACACCTGCTACTACTTCTGATATGAAGACTAGATTGGTGAATGTTAAAGGAAGTTGA 1374 0.3777 MSKTNTTQTSCSTSLLDLLTEMKKQSNTEQQTNFQPKSPSNFSSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLSTEKGLTQFEESSPESVTASWMKKRFFVETLVNVLPPEKDSIPCNFLLRLLRTANMVNVDVTYKQELEKRVSWQLDQASLKELVIPSFSHTCGTLLDVELVIRLVKRFVSLDNEGAKSGAALVKVAKLVDCYLAEAAVDANLSLSEFVTLAGVLPSHARATDDGLYRAIDTYLKAHSNVSKQERKGLCRLIDCRKLTQEASLHAAQNERFPVRAVIQVLLSEQTKLNRHNNHQMDWSGSIMSITRSPTNGFGLEAVPTARCLSKREMNIQQMEIKKLKEDVHRLQSQCNTMQVQMERMVEKKKGFFKWSKRFSVNGFGKGDAGVVVERRGGGGEEGEDGDHVEFGGRQTPATTSDMKTRLVNVKGS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02377 457 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 457 - -
Car06g02377 457 MobiDBLite consensus disorder prediction 421 457 - -
Car06g02377 457 MobiDBLite consensus disorder prediction 421 435 - -
Car06g02377 457 Pfam NPH3 family 46 292 IPR027356 -
Car06g02377 457 ProSiteProfiles NPH3 domain profile. 45 316 IPR027356 -
Car06g02377 457 Coils Coil 358 392 - -
Car06g02377 457 PANTHER OS12G0117600 PROTEIN 1 457 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02377 Car-Chr6 25871274 25873381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02377 44 317 EF-hand Containing Proteins AT3G44820 35.197 5.86e-50 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02377 - - cam:101500573 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02377 06 25871274 25873381 Car06g02377 06 25871274 25873381 ECH
Car01g02815 01 53421062 53423563 Car06g02377 06 25871274 25873381 PCT