Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02334 ATGGTTCTCGCACAGTTAGGTGGGAGCATTTCGCGTGCTCTTCAGCAGATGAGCAATGCGACAATCATCGACGAGAAAGTTCTCAATGATTGTCTCAATGAAATCACTCGCGCTCTTCTTCAATCCGATGTTCAATTCAAGCTCGTCCGTGATATGCAGACCAATATTAAGAAGATCGTTAACCTTGATGATCTAGCTGCTGGTCATAACAAACGCAGGATCATTCAGCAAGCTGTATTCAATGAACTCTGCAAAATTTTGGATCCTGGGAAGCCGGCCTTCGCTCCCAAAAAAGGAAAAGCAAGTGTTGTCATGTTTGTTGGTTTACAAGGGTCTGGGAAAACCACTACTTGTACAAAATATGCATTTTATCATCAAAAGAAAGGCTGGAAGCCGGCTCTAGTATGTGCAGATACATTCAGAGCTGGTGCATTTGATCAGTTGAAGCAAAATGCAACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAATCAGATCCTGTAAAAATTGCTGTGGAAGGTGTGGAAAGATTCAAGAAAGAAAACTGCGATCTAATTATTGTCGATACCAGTGGACGGCACAAACAGGAAGAGTCTCTTTTTGAAGAAATGCGCCAAGTTTCAGAAGCAACGAAACCAGATCTTGTTATCTTTGTTATGGATAGCAGTATTGGTCAGGCTGCATTTGATCAAGCTCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTCATTATCACTAAAATGGATGGTCATGCAAAGGGTGGTGGAGCGCTTAGTGCTGTTGCGGCTACAAAGAGTCCTGTCATATTCATCGGAACCGGAGAACACATGGATGAATTTGAAGTTTTTGATGTCAAACCATTTGTCAGTCGCCTATTAGGCATGGGAGACTTGTCTGGGTTCATGGACAAAATCCAAGAAGTTGTTCCTATGGATCAACAGCCTGAACTGCTTCAAAAGCTTTCAGAAGGAAACTTTACGTTGAGGATCATGTACGAGCAATTTCAGAATATTCTTAAAATGGGTCCCATTGGCCAGGTTTTTTCTATGCTACCAGGATTTAGCAATGAATTAATGCCAAAAGGCCGTGAGAAGGAAAGCCAGGCAAAAATTAAGCGTTACATGACAATGATGGACTCAATGACAAATGAAGAGTTGGATAGTTCAAACCCAAAGCTGATGAATGAGTCAAGAATGATGCGAATAGCTAGAGGTTCTGGTCGGCAAGTTAGGGAAGTGATGGAGATGATGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGACTAAAAATTCCAAAGAAGGGAGACATGAGTGCCTTATCCCGAAATATGAATGCCCAGCACATGAGCAAAATCCTCCCTCCACAGATGCTAAAGCAAATTGGAGGTATGGGTGGGTTACAAAGCTTGATGAAACAAATGGGATCTACTAAGGACATGATGGGAATGTTTGGTGGTGGCGGGGATAACTAA 1491 0.4205 MVLAQLGGSISRALQQMSNATIIDEKVLNDCLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPAFAPKKGKASVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEESLFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGFMDKIQEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSNELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRQVREVMEMMEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKDMMGMFGGGGDN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02334 496 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 495 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Car06g02334 496 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Car06g02334 496 Gene3D - 91 285 IPR027417 -
Car06g02334 496 Gene3D - 5 306 IPR042101 -
Car06g02334 496 Gene3D - 310 452 IPR036891 GO:0006614|GO:0008312|GO:0048500
Car06g02334 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 298 IPR027417 -
Car06g02334 496 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Car06g02334 496 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 427 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Car06g02334 496 CDD SRP54_G 102 294 - -
Car06g02334 496 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 495 - -
Car06g02334 496 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Car06g02334 496 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Car06g02334 496 SMART AAA_5 100 277 IPR003593 -
Car06g02334 496 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Car06g02334 496 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Car06g02334 496 Pfam Signal peptide binding domain 327 427 IPR004125 GO:0006614|GO:0008312|GO:0048500
Car06g02334 496 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 92 IPR036225 -
Car06g02334 496 SUPERFAMILY Signal peptide-binding domain 298 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02334 Car-Chr6 25078459 25084237 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02334 K03106 - gmx:100815799 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02334 06 25078459 25084237 Car06g02334 06 25078459 25084237 ECH
Car01g02873 01 53839088 53842763 Car06g02334 06 25078459 25084237 PCT