Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02873 ATGGTTTTAGCACAATTAGGAGAGAGCATTTCACGTGCTCTCCAGCAGATGAGCAATGCAACGATCATTGACGAAAAAGTCCTCAATGATTGCCTCAACGAAATCACTCGAGCTCTCCTTCAATCCGATGTTCAGTTCAAGCTCGTTCGTGACATGCAAACTAACATCAAGAAGATCGTTAACCTCGACGATCTCGCCGCTGGTCACAATAAACGCAAAATCATCCAACAAGCTGTGTTTAACGAACTATGCAAAATGTTGGATCCTGGAAAACCTGCTTTCGTTCCCAAAAAAGGAAAAGCAAGTGTCGTCATGTTTGTTGGATTACAAGGTTCTGGGAAAACTACAACGTGTACGAAATACGCTTATTATTATCAGAAGAAAGGATGGAAGCCAGCTTTAGTGTGTGCCGATACATTTAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCAACTAAAGCTAAGATTCCTTTTTATGGAAGCTATATGGAATCAGATCCTGCCAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAAGAAGAAAACTGTGATCTTATAATTGTAGATACTAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCGGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTTGCTGTTGGAGCTGTAATTATTACCAAAATGGATGGTCATGCCAAGGGTGGTGGTTCTCTTAGCGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATAGGAACTGGTGAACATATGGATGAGTTCGAAATTTTTGAAGTTAAGCCGTTTGTTAGTCGTCTATTAGGCATGGGTGACTGGTCTGGGTTTATGGACAAAATTCATGAAGTTGTTCCTATGGATCAACAGCCTGAATTGCTTCAAAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTACGAGCAATTTCAGAACATACTTAAAATGGGTCCTATCAGCCAGGTGTTTTCTATGCTTCCAGGATTTAGTGCAGAATTAATGCCAAAAGGCCGTGAGAAAGAAAGCCAGGCAAAAGTTAAGCGTTACATGACAATGATGGATTCAATGACAAACGAAGAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAGTCACGCATGATGCGAATAGCTCGAGGTTCTGGTCGTCAAGTTAGAGAAGTGTTGGACATGATGGAAGAGTACAAACGTCTTGCAAAGATATGGAGTAAAATGAAAGGGCTTAAAATACCGAAGAAAGGTGACATGAGTGCCCTATCTCGAAATATGAATGCACAGCACATGGGCAAAGTCCTCCCTCCACAGATGCTTAAGCAAATTGGTGGCATGGGCGGGTTACAAAACCTAATGAAGCAGATGGGATCTGCTAAAGATATGATGGGAATGTTTGGTGGTGGTGGTGAATAG 1488 0.4173 MVLAQLGESISRALQQMSNATIIDEKVLNDCLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRKIIQQAVFNELCKMLDPGKPAFVPKKGKASVVMFVGLQGSGKTTTCTKYAYYYQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPAKIAVEGVERFKEENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGSLSAVAATKSPVIFIGTGEHMDEFEIFEVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKVKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRQVREVLDMMEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMGKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMFGGGGE 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02873 495 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 427 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Car01g02873 495 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Car01g02873 495 SUPERFAMILY Signal peptide-binding domain 298 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
Car01g02873 495 SMART AAA_5 100 277 IPR003593 -
Car01g02873 495 Gene3D - 91 285 IPR027417 -
Car01g02873 495 Gene3D - 311 451 IPR036891 GO:0006614|GO:0008312|GO:0048500
Car01g02873 495 CDD SRP54_G 102 294 - -
Car01g02873 495 Pfam Signal peptide binding domain 327 427 IPR004125 GO:0006614|GO:0008312|GO:0048500
Car01g02873 495 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Car01g02873 495 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Car01g02873 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 298 IPR027417 -
Car01g02873 495 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 92 IPR036225 -
Car01g02873 495 Gene3D - 5 306 IPR042101 -
Car01g02873 495 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Car01g02873 495 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 494 - -
Car01g02873 495 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Car01g02873 495 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 494 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Car01g02873 495 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02873 Car-Chr1 53839088 53842763 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02873 K03106 - rcu:8282364 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02873 01 53839088 53842763 Car01g02873 01 53839088 53842763 ECH
Car01g02873 01 53839088 53842763 Car06g02334 06 25078459 25084237 PCT