Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01456 ATGGAATATGAGTATATGCTTGGAGTGATTCTGGCTTGTAGTTTGGCTTTGGTGTTTGTTGTGTACAGTTTTGCTGAAAAGAAGAAGGTCACAGAAACAGGTTCATCAGAAAATGTAAAAAGTAGTAATCAGTGTGCAAAGACATCAGAAAATGGAGAAGCAGATATCATCATTGTAGGTGCTGGAGTTGCTGGTGCTGCACTTGCTTATACACTTGGAAAGGATGGACGGCAAGTGCATGTGATTGAAAGAGACTTGAGTGAACCTGACAGAATTGTTGGAGAATTGCTGCAACCTGGAGGATATCTTAAGTTACTTGAATTGGGTCTTGAGGATTGTGTAGATGAAATTGATTCTCAGAGAGTGTTTGGCTATGCTCTTTATAAGGATGGAAAAAATACCAAGCTGTCATATCCCTTGGAAAGTTTTAGCTCTGATGTTTGTGGAAGAAGTTTTCACAATGGTCGTTTCATACAAAGAATGAGACAAAAGGCTTCATCTCTTCCAAATGTAAAATTAGAGCAAGGAAGTGTCACATCTTTACTTGAAGAAAATGGAACCATCATAGGAGTGAATTATAAAACCAAGAGTGGACAAGAATTCACAGCAAAGGCTCCTCTTACAATAGTATGTGATGGTTGTTTTTCCAACTTGAGGCGTTCTCTTTGTGATCCTAAGGTTGAATCTCCCTCTCATTTTGTTGGACTGGTTTTGGAGAATTGTAATCTTCCACATGcaaaccatggacatgttatcttgggtgatccttcaccaattttgttctaccctatcagtagtactgagattcgttgtttggttgatgtgcctggccaaAAATTACCTTCCCTTGGTAATGGTGAAATGGCTCATTATTTGAAAACTGTGGTAGCTCCTCAGGTTCCTCCAGAGTTGTATGCTTCATTTATAGCAGCAGTTGATAAAGGAAACATAAGAAGCatgccaaacagaagcatgcctgcatcaccttatcccacccctggggctcttctgatgggagatgccttcaatatgcgtcacccgttaacaggaggtggaatgactgtggctttgtctgacattgttgtgctgagaaatttacttaaacctctacatgacctgcATGATGCTTCTGCTCTTTGCAAATACCTTGAATCATTCTACACCCTACGCAAGGttggttctaagatgacaaataaattttaa 1203 0.2959 MEYEYMLGVILACSLALVFVVYSFAEKKKVTETGSSENVKSSNQCAKTSENGEADIIIVGAGVAGAALAYTLGKDGRQVHVIERDLSEPDRIVGELLQPGGYLKLLELGLEDCVDEIDSQRVFGYALYKDGKNTKLSYPLESFSSDVCGRSFHNGRFIQRMRQKASSLPNVKLEQGSVTSLLEENGTIIGVNYKTKSGQEFTAKAPLTIVCDGCFSNLRRSLCDPKVESPSHFVGLVLENCNLPHANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGEMAHYLKTVVAPQVPPELYASFIAAVDKGNIRSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDLHDASALCKYLESFYTLRKVGSKMTNKF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01456 400 SUPERFAMILY FAD/NAD(P)-binding domain 54 385 IPR036188 -
Car06g01456 400 PANTHER SQUALENE MONOOXYGENASE 1 394 IPR040125 GO:0004506|GO:0016126
Car06g01456 400 Gene3D - 46 398 IPR036188 -
Car06g01456 400 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 394 - -
Car06g01456 400 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 55 77 - -
Car06g01456 400 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 347 363 - -
Car06g01456 400 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 204 219 - -
Car06g01456 400 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 332 347 - -
Car06g01456 400 Pfam Squalene epoxidase 204 398 IPR013698 GO:0004506|GO:0016021|GO:0050660
Car06g01456 400 Pfam NAD(P)-binding Rossmann-like domain 58 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01456 Car-Chr6 14063909 14068364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01456 54 391 Miscellaneous Gene Families AT1G58440 82.840 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01456 K00511 - gmx:100808856 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01456 06 14063909 14068364 Car06g01456 06 14063909 14068364 ECH
Car06g01456 06 14063909 14068364 Car01g00204 01 1567875 1576825 PCT