Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01122 ATGGCACCTTCTCATACCTTTCCTCTTCGTTGGGAAAGCACAGGACACCAATGGTGGTATGCATCACCTATTGACTTAGCAGCTGCAAATGGTCTCTATGATTTAGTCACTGAGCTTCTCCATCTTGACACAAATCTTCTCATCAAACTCACTTCTCTTCGTCGAATTCGACGCCTCGAAACCGTCTGGGACGATGAAGCTCAGTTTGAACATGTTTCCAAGTGCAGGTCTCATGTTGCAAAGAAGCTTTTTGTTGAGTGTGAAACAGAAAATGGAAAAGGAAAAAATTCTCTTATTACTTCTGGTTATGGTGGATGGCTTTTGTACACAGCTGCTTCTTCTGGTGATGTTGAATTTGTTGATGAATTGTTGAGAAGAGATCCTTTTTTGGTTTTTGGTGAAGGAGAGTATGGTGTTACTGATATGTTTTATGCTGCAGCTAGGAGTAAGAATTGTGAGGTATTCAATCTTGTTCTTCATTTTGCTCTCTTGAGAAAAGATTGTGCTATTGAATTGGATGAAGTTGGTGGAGTTTTCAAGAGGGAGATATTGAATAGAGCTATTCATGCTGCTGCTAGAGGAGGGAATTGGGAAATACTGAAGAAGAAGCTACTTTTAGGAAGTGATTCTCAGATTTTGTCTTATAGAGATGCTCATGGATGCACTGTCTTGCATTCAGCAGCTGGAAGAGGCCAGGTTGAGGTGGTAAGAAATCTAATTGATCAATCACCTGATATTATAAACTCTACTGATTCTCAAGGCAATACAGCATTACATGTGGCTTGTTACAGAGGTCACTTTCCTGTGGTAGAGCTTCTGATTGAAGCATCTCCTTCATTAACAATGTTAACCAATCACAATGGAGACACTTTTCTTCATATGGCAGTGTATGGTTTCAAAAGCCCTGGTTTCTGCAGACTCGACAAGCACGCCGAGCTCATGAAACAGTTATTACTAACCGAAAAGATCACGAACATGAAAGACATAATCAATGTTAAGAACAATGCTGGTAGAACACCTCTTCATGTAGCTGTCATTCATGATGTCAAATGTGATGTAGTGGAATCACTTATGTCAGTTCGATCGATCGATTTAAATGTCCGCGACACTGATGGAATGACTCCTTTGGATTATTTGAAACAACGACCGATATCAGGAACTTCTGAATTTTTAATCAAGCAGTTGATTTCAGCTGGTGGAATATCTAATTGTGAAGATTGTGTGACAAGAAATGCAATTGTGAATCATATGAAAACTCATCATGGTGTTATTGGAAATAGTCCTGGAACTTCATTTAGTATATCAGATGCTGAGATATTATTGTACACATGCATTGAGAATTCATCTGATAGAATTGTCAATAATGATCAAGCAAGTTTAGAAACAGAATCAAATTCATTTTCAATTGAAGTAGACAATGATTCAAGTTCCTCATGTAACAGCAAGACTACTAGTTCTGTTAATTCGGCTGCGAAACGGTTAAAGAATCTTCTCAAGTTCCATAGGAAAAGAGAGACAAAAGCATCAGCCTCAGAATTTGAAGATGATGATAATATTTCTGTTGATTCTATAAGTTCAAGGAAAAATTTGGAAGATTTTCCAATGACATTAAGGCAAAGATACTCAATAAATCAGTGTTCACTTCCAAACAACAAAAGAACATTATCTATAAGAACTTTATCACTTCCAAATCCAACTGCTAAAAAAAATTTCACTGCAGGACTAATGCAAGGTGTAATTAAGGTAAAGCCAAAATTGGATAATTTATCTGATTCTTCAAACAATAAGGAAAAACATGTTGATACAATTGGACCCTCTTGCTCCAATGGTACCTTAGAGTTGAAATATAATAAGCAGAGAACATTCAATAAGAAATTGATGAACAGGTATTTTTCTTTTGGAGCACAAGGGCAGGCTTTGGAAGATGCAAACAGTTGCACACTGTCAAAACATAGTTCTAAAGTGTTTTAG 1971 0.3714 MAPSHTFPLRWESTGHQWWYASPIDLAAANGLYDLVTELLHLDTNLLIKLTSLRRIRRLETVWDDEAQFEHVSKCRSHVAKKLFVECETENGKGKNSLITSGYGGWLLYTAASSGDVEFVDELLRRDPFLVFGEGEYGVTDMFYAAARSKNCEVFNLVLHFALLRKDCAIELDEVGGVFKREILNRAIHAAARGGNWEILKKKLLLGSDSQILSYRDAHGCTVLHSAAGRGQVEVVRNLIDQSPDIINSTDSQGNTALHVACYRGHFPVVELLIEASPSLTMLTNHNGDTFLHMAVYGFKSPGFCRLDKHAELMKQLLLTEKITNMKDIINVKNNAGRTPLHVAVIHDVKCDVVESLMSVRSIDLNVRDTDGMTPLDYLKQRPISGTSEFLIKQLISAGGISNCEDCVTRNAIVNHMKTHHGVIGNSPGTSFSISDAEILLYTCIENSSDRIVNNDQASLETESNSFSIEVDNDSSSSCNSKTTSSVNSAAKRLKNLLKFHRKRETKASASEFEDDDNISVDSISSRKNLEDFPMTLRQRYSINQCSLPNNKRTLSIRTLSLPNPTAKKNFTAGLMQGVIKVKPKLDNLSDSSNNKEKHVDTIGPSCSNGTLELKYNKQRTFNKKLMNRYFSFGAQGQALEDANSCTLSKHSSKVF 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01122 656 ProSiteProfiles Ankyrin repeat profile. 253 285 IPR002110 GO:0005515
Car06g01122 656 Pfam Ankyrin repeats (3 copies) 188 278 IPR002110 GO:0005515
Car06g01122 656 Gene3D - 12 422 IPR036770 -
Car06g01122 656 SMART ANK_2a 336 367 IPR002110 GO:0005515
Car06g01122 656 SMART ANK_2a 287 326 IPR002110 GO:0005515
Car06g01122 656 SMART ANK_2a 137 170 IPR002110 GO:0005515
Car06g01122 656 SMART ANK_2a 103 132 IPR002110 GO:0005515
Car06g01122 656 SMART ANK_2a 19 48 IPR002110 GO:0005515
Car06g01122 656 SMART ANK_2a 219 249 IPR002110 GO:0005515
Car06g01122 656 SMART ANK_2a 371 406 IPR002110 GO:0005515
Car06g01122 656 SMART ANK_2a 253 282 IPR002110 GO:0005515
Car06g01122 656 SUPERFAMILY Ankyrin repeat 107 393 IPR036770 -
Car06g01122 656 Pfam Ankyrin repeats (many copies) 331 378 IPR002110 GO:0005515
Car06g01122 656 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 4 651 - -
Car06g01122 656 ProSiteProfiles Ankyrin repeat region circular profile. 219 246 - -
Car06g01122 656 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 4 651 - -
Car06g01122 656 ProSiteProfiles Ankyrin repeat region circular profile. 253 275 - -
Car06g01122 656 ProSiteProfiles Ankyrin repeat profile. 219 251 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01122 Car-Chr6 10892732 10895933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01122 108 377 Miscellaneous Gene Families AT2G31820 30.657 1.52e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01122 - - gmx:100791999 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02044 05 65689500 65692614 Car06g01122 06 10892732 10895933 PCT