Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00825 ATGATTTTTCAAATCAAAACCCTATCAAAAAACCCAAACTGGGCGCCACAACTCCATAGCAGAGAAACCATGGGAGGTGCAGGAAGGTCACGAACTCAAAGAAAACACTTTCGTCAAAACAGACAAAATGTTTGGAAGCGTTCCAAATCCGATCCAGACCCTTCTTCCTTATCCTCCGATAAACCACAAACTACTCATTGGACTCCTTTCGAAACTCAAAATCCTTCATTCGATTCATATTACAAGGAACAACGAATAGTGGATCCACAAGAGTGGGAACAATTCGTCGCAATTCTCAGAACACCGTTGCCTGCTTCATTTAGAATCAATTCTAGTAGTCAATTTGCTGACGATATTCGTTCTCAATTGGAAAATGACTTTGTGCATTCTCTTCGTGCTGAGGTTGTTGAAGGGGGTGAGACAGAGGCTATTCGGCCTTTGGCTTGGTATCCTGGGAACTTTGCTTGGCATTCGAATTTTTCACGTATGGAGCTGAGGAAAAATCAAACATTAGAGAGGTTCCACGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCGCTATTCTTGGATGTGCATCCAGACCATTTTGTTCTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCAACTAAAGCAGGATCACTACCTGATGGAATGGTTATAGCAAATGATCTTGATGTACAAAGATGTAATCTTCTCATCCACCAAACAAAAAGAATGTGCACGGCCAACCTAATTGTTACTAATCACGAAGCACAACATTTCCCAGGATGTCGTTTAAACAAGAACAAGAATTACGAAAAAATGGAGTCAGATCACAATATTCACCAACTGGTATTTGACCGTGTTCTGTGTGATGTCCCGTGTAGTGGAGATGGTACACTTCGTAAGGCACCTGATATGTGGAGGAAATGGAATTCAGGGATGGGACAAGGGCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTTTATCTTTACTCAAAGTTGGTGGAAGAATGGTTTATTCAACATGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCAGAGGTTTTGCGGAGGTGTGGAGGGTCTGTCGAACTTGTTGATGTATCTAGTGAGCTTCCACAACTTATTCGACGGCCAGGTCTCAAGAGATGGAAGGTATATGACAAGGGCAGTTGGTTCGTTTCTTCCAAAGATGTTCCCAAGTTTCGTAGAAGTGTAATTCTTTCCAGCATGTTTCCTTCTGGAATACGCTATCAGGATCTGGGTGACAGTAATTGTAATGCTGACACGGGAGATGACATTACTAGTGTGGTTAATGGAAAAGCTGAAGATGGAATTGAAGCACTAGAGAATCCTGTGATGTCTGAGTCTGCCGAAGCTTCTAATTTTCCTCTTGAGCACTGCATGAGGATAATGCCTCATGATCAGAACACTGGGGCCTTTTTCATTGCTGTGCTGCAAAAAGTTTCTCCTTTACCAGCTCTTCTCGAAAAACCCAGCACAATAATTGATGAGCCAAATGTAGAACCACCAAACCATAGTCTTGAGGATGCACAAACACCGCAGATCAATTCATCTGAAACTACACTTGAAGAAGTCTTAGCAGTTCCAGAGGAAAATGTGAATGACAATATATACAATACAGAAGATTTGGAAGTTATTACATGTGAAGAACAGAATTCTGAGGAAGCTAAAGAACCCCATAATGCAGAAAACACGGAAAAGAAGGTTCCGGGCAAAAGAAAGCTACAAAGTCAAGGCAAATGGAGAGGTGTTGACCCGGTTCTCTTTTTCAAAGATGAAGCAGTTATTAATAGTATAAAGGATTTTTATGGAATAGACGAGCGTTTTCCATTCAATGGTCGCCTTGTTACAAGAAACAGTGATATGAGTCATGTGAAAAGAATTTACTATGTCTCCAAGTCAGTTAAGGATATTCTTGGGTTGAACTTCTCAGTTGGGCAGCAACTCAAAATAACTTCTGTTGGACTGAAGATGTTTGAAAGACAAACAGCACGAGAAGGTAGCTCTGCACCATGTGCTTTCCGGATATCATCCGAAGGATTGCCCATTATTCTCCCATTCATAACAAAGCAAATCGTACATGCATCTCCCGTGGACTTCAAGCATCTTCTGCAGGACAAAGATGTAAAATTTACAGATTTTGCCGATGCCCAGTTTGGTGAAAAGGCAGCAAACCTATTGCCAGGTTGTTGCGTGGTAATTATGGCTAAAGCTAGCACAGTTGCTACTGAATCCTTCGAAGTGGATGAGTCAACAATTGCCATCGGATGCTGGAGGGGTAGGGCAAGGTTGTCAGTGATGGTTACTGCGATGGACTGCCAAGAAATGCTTGAAAGGCTTTTAATACGTCTAGACACAGAAAAGGGCTCTTCTGGGCATGTGGGCAAATTGTCGGATGATGTGGGAGGTGAAGTACAGCCTGTTCAGGAGTTGAACGATAAAAATGATGATGATGTGAAAGCTGCTGTGAGTTAG 2556 0.4178 MIFQIKTLSKNPNWAPQLHSRETMGGAGRSRTQRKHFRQNRQNVWKRSKSDPDPSSLSSDKPQTTHWTPFETQNPSFDSYYKEQRIVDPQEWEQFVAILRTPLPASFRINSSSQFADDIRSQLENDFVHSLRAEVVEGGETEAIRPLAWYPGNFAWHSNFSRMELRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNKNKNYEKMESDHNIHQLVFDRVLCDVPCSGDGTLRKAPDMWRKWNSGMGQGLHSLQVLIAMRGLSLLKVGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVELVDVSSELPQLIRRPGLKRWKVYDKGSWFVSSKDVPKFRRSVILSSMFPSGIRYQDLGDSNCNADTGDDITSVVNGKAEDGIEALENPVMSESAEASNFPLEHCMRIMPHDQNTGAFFIAVLQKVSPLPALLEKPSTIIDEPNVEPPNHSLEDAQTPQINSSETTLEEVLAVPEENVNDNIYNTEDLEVITCEEQNSEEAKEPHNAENTEKKVPGKRKLQSQGKWRGVDPVLFFKDEAVINSIKDFYGIDERFPFNGRLVTRNSDMSHVKRIYYVSKSVKDILGLNFSVGQQLKITSVGLKMFERQTAREGSSAPCAFRISSEGLPIILPFITKQIVHASPVDFKHLLQDKDVKFTDFADAQFGEKAANLLPGCCVVIMAKASTVATESFEVDESTIAIGCWRGRARLSVMVTAMDCQEMLERLLIRLDTEKGSSGHVGKLSDDVGGEVQPVQELNDKNDDDVKAAVS 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00825 851 MobiDBLite consensus disorder prediction 837 851 - -
Car06g00825 851 Pfam 16S rRNA methyltransferase RsmB/F 200 386 IPR001678 GO:0008168
Car06g00825 851 PRINTS RNA (C5-cytosine) methyltransferase signature 210 220 IPR023267 GO:0001510
Car06g00825 851 PRINTS RNA (C5-cytosine) methyltransferase signature 302 314 IPR023267 GO:0001510
Car06g00825 851 PRINTS RNA (C5-cytosine) methyltransferase signature 352 368 IPR023267 GO:0001510
Car06g00825 851 PRINTS RNA (C5-cytosine) methyltransferase signature 490 507 IPR023267 GO:0001510
Car06g00825 851 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 88 508 IPR029063 -
Car06g00825 851 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 156 177 IPR023270 GO:0016428
Car06g00825 851 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 386 405 IPR023270 GO:0016428
Car06g00825 851 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 676 688 IPR023270 GO:0016428
Car06g00825 851 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 95 508 IPR001678 GO:0008168
Car06g00825 851 MobiDBLite consensus disorder prediction 578 600 - -
Car06g00825 851 MobiDBLite consensus disorder prediction 13 72 - -
Car06g00825 851 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 27 818 - -
Car06g00825 851 MobiDBLite consensus disorder prediction 49 72 - -
Car06g00825 851 Gene3D Vaccinia Virus protein VP39 72 422 IPR029063 -
Car06g00825 851 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 27 818 IPR023267 GO:0001510
Car06g00825 851 MobiDBLite consensus disorder prediction 578 604 - -
Car06g00825 851 ProSitePatterns NOL1/NOP2/sun family signature. 301 312 IPR018314 GO:0003723|GO:0008168
Car06g00825 851 MobiDBLite consensus disorder prediction 816 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00825 Car-Chr6 8074366 8082431 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00825 K15334 - gmx:100808859 1305.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00825 06 8074366 8082431 Car06g00825 06 8074366 8082431 ECH
Car06g00825 06 8074366 8082431 Car05g02101 05 66227788 66234961 PCT