Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00704 ATGCTGAAATCTGATAATGAAGATATTGATGTATTCTATGACTCATTGGATAGCTTATCAGGTCAAGATTCTGTTTTAGTCAAAGAAAAGTTTGGTTTTGATGATTATGATGAAATTTGGGTGAATGAGCCTGTTATTAGTGTGAAGGAAAGAAGAAAACATTTTCTGCAGTGTATGGATTTAGTACTAGCTGATACTTTTTCCAAGATTAGCTCACAAGATAGGATCATGAAGTGCAGTGATGCAGTCTCAAATGGATGCATTTCATCAACTTGTGATCAAGTGTCTGAGAAGTTGATTTTTTCTGGATGGAATGCAGCTTCTGAAGCAGAAGTTTTGTTGGAAGAATTGAAATCGCGTCCGCTAGAGAAAATGAATGAGCTATCAGGTGAGGCACAAGAAGAATTTCAGGATTTTGATAAGAATAATGATAGGATAAACTGGTGGAAGCGCTTTGTAAACATGAAGAAAGGCGATGAAGTTAAAGTTAGATCGATATCGCGTACAGGGACGAATAAAACTCGGAGGATAAAGGTAAGGAAGAACAAGAAGAGGTGGCTGGAGTTCAGTGAGCTATACATTGGACAAGAGATTAAAGCTCACAAAGGCTTAATTTGGACTATGAAATTCAGTCCTAATGATCAGTATTTAGCTAGTGGAGGTGAAGATGGTGTTGTGCGCTTATGGCGCGTTAAGTCGCTTGATACATCAAGTATTTGTTTCAACTCAGAAGGTGGCAGTACTGGTAGCCAGCCTTTAATTGAGGAATCACCACTACAAGAATTCTTTGGTCATTCCAGTGATATATTGGATTTGGCTTGGTCTAATTCAGATATTCTTCTATCGTCTTCCATGGATAAAACGGTTCGCTCTTGGAGACTTGGTTGTGATCAATGTCTAAGTGTTTTTCATCACAAGGACTTTGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATAAGTGGATCAATTGATGGTAAAGTTCGAATATGGGGGATGCGCGAAGAGCGAGTTATTGACTGGACAGATATACGAGATGTCATAAGTGCTATAAGTTACCAACAAGATGGAAAAGGATTTGTAGTTGGTTCTATTACTGGCACTTGCCGTTTTTATGTTGCTGCAGGAAAATATTTCCAGCTTGAGGCGCAGATTGATATCCGTGGAAAGAAGAAAGCATCAAGCAACAAGATTACTGGTATTCAGTTCTTCCAAAACGACTGTGAGAGAATTATGATCACATCTGAAGATTCAAAaattcgcatattggatagaaatgagattgttcagaaatatagagGCCTACCACGGTCAGGAAGTCAAATGTCAGGTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGAGAAGACTCCCATGTATATATTTGGAACTTCAATGATTTAAGAAGCGCTTCTTCGGAAAAATCGAAATCTGAGTATTCTTGTGAGTATTTTTCCTTCAAAGGTGTAACTGTCGCAATACCTTGGCCAGGCATGAAAGCAGAAGATAGAAGAGGCTGTAGAAATTATAACTTACCAGAAACCAAACTAGAGTTTGTTTCTGAGGTTAGAGATACAGAACGCTTTTCGCTTGGTAATTGGTTCTTCATCGATGGTACATGTCGAGGTTCTACTTCTATGACATGGCCTGAGGAGAAACTTCCAACATATGATGATGATAAAGATAGAAGCTATGACAGAAAAATATCAGAAACATGGGGTCTAACTATCGTGGCGGCCGGTAGTGATGGAACTATCAAGACATTCCACAACTTTGGCTTGCCTGTTAGGCTTTAG 1812 0.3775 MLKSDNEDIDVFYDSLDSLSGQDSVLVKEKFGFDDYDEIWVNEPVISVKERRKHFLQCMDLVLADTFSKISSQDRIMKCSDAVSNGCISSTCDQVSEKLIFSGWNAASEAEVLLEELKSRPLEKMNELSGEAQEEFQDFDKNNDRINWWKRFVNMKKGDEVKVRSISRTGTNKTRRIKVRKNKKRWLEFSELYIGQEIKAHKGLIWTMKFSPNDQYLASGGEDGVVRLWRVKSLDTSSICFNSEGGSTGSQPLIEESPLQEFFGHSSDILDLAWSNSDILLSSSMDKTVRSWRLGCDQCLSVFHHKDFVTCIQFNPVDENYFISGSIDGKVRIWGMREERVIDWTDIRDVISAISYQQDGKGFVVGSITGTCRFYVAAGKYFQLEAQIDIRGKKKASSNKITGIQFFQNDCERIMITSEDSKIRILDRNEIVQKYRGLPRSGSQMSGSFTSSGKHIISVGEDSHVYIWNFNDLRSASSEKSKSEYSCEYFSFKGVTVAIPWPGMKAEDRRGCRNYNLPETKLEFVSEVRDTERFSLGNWFFIDGTCRGSTSMTWPEEKLPTYDDDKDRSYDRKISETWGLTIVAAGSDGTIKTFHNFGLPVRL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00704 603 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 344 IPR001680 GO:0005515
Car06g00704 603 Gene3D - 188 491 IPR015943 GO:0005515
Car06g00704 603 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Car06g00704 603 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Car06g00704 603 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Car06g00704 603 PANTHER WD REPEAT DOMAIN 44 1 248 IPR040324 -
Car06g00704 603 PANTHER WD REPEAT DOMAIN 44 254 603 IPR040324 -
Car06g00704 603 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Car06g00704 603 SUPERFAMILY WD40 repeat-like 193 593 IPR036322 GO:0005515
Car06g00704 603 Pfam WD domain, G-beta repeat 298 334 IPR001680 GO:0005515
Car06g00704 603 Pfam WD domain, G-beta repeat 257 292 IPR001680 GO:0005515
Car06g00704 603 Pfam WD domain, G-beta repeat 197 229 IPR001680 GO:0005515
Car06g00704 603 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 254 603 - -
Car06g00704 603 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 248 - -
Car06g00704 603 SMART WD40_4 387 427 IPR001680 GO:0005515
Car06g00704 603 SMART WD40_4 191 230 IPR001680 GO:0005515
Car06g00704 603 SMART WD40_4 255 293 IPR001680 GO:0005515
Car06g00704 603 SMART WD40_4 428 469 IPR001680 GO:0005515
Car06g00704 603 SMART WD40_4 337 376 IPR001680 GO:0005515
Car06g00704 603 SMART WD40_4 296 335 IPR001680 GO:0005515
Car06g00704 603 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 337 - -
Car06g00704 603 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Car06g00704 603 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 478 IPR001680 GO:0005515
Car06g00704 603 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 233 - -
Car06g00704 603 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00704 Car-Chr6 7041285 7044845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00704 193 383 Miscellaneous Gene Families AT5G08390 22.449 8.26e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00704 K20241 - gmx:100819135 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00704 06 7041285 7044845 Car05g02477 05 69899518 69902900 PCT