Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02477 ATGCTGATCTCCGATGAAAGAGATAATGATGTGTTCTTTGACTCGTTGGATTGTTTGGCACCTTCTCAAGATTCTCTTTTGACTAGTAGTCAAGAATTTGGGTATGATATTTGGTTGAATGAGCCTCTTAGTGTGAATGAAAGAAGAGAAAAATTTCTACAAGATATGGGTTTGGTTCATGTTTCTGTATCAAATGTTTCTGAGAACTTGGTTGCTTCAGAAAGAGAAGCCAAAGATGATAAACAAGATGCAAGTATTCCAGGGAAGGTAGATGAGCTATCATGTTCAAATCAAGAGCTTATACATAGAGAAGCTGGGAATCTAAATGAATCTGAATTTCGTGCTATTGATACGGGTAAAAAGATAATGAAAAACTGGTGGCAGCAATTAGTGAACAGCGGGAAAGTAGTGAGAGGGAAAGTAACATCGAAACTTAATAACACGAGTGCCAAAAAATCTCGTCGTATTAATGTAAGGCATAATAAGAAAAACTGGATGGAGTTGAGTGCTATGTATATTGGACAAGAGATTAGAGCACACAAGGGAATAATTTGGACTATGAAATTTAGTCCCAATGGTCAGTATCTAGCTACTGGAGGTGAAGATGGTGTCGTTCGTATATGGCGCGTTTCATCGCCAAATGCATTAAGTATATGCTTTGCTGCAGAAGACAGTGTCGTTAACAAATTGAAAGATGACATATCTTTTTCCGAGAAGAAACAGTTGCGTCGACCCCCTGTTGTTCTTCCTAATAGGATTCTCAAAATTGATGAATCCCCGACGCAAGAATTATATGGTCATTCCAATGATGTGATGGATTTGGCTTGGTCTGATTCGAATGTCCTCCTTTCCTCGTCGATGGATAAAACTGTTCGCATGTGGAAAATTGGTTGTGATCGATGTTTAAGAGTTTTCCATCATAAAGATTATGTGACTTGCATTCAATTCAACCCAGTCAATGAAAATTACTTCATCAGTGGCTCCATAGATGGTAAAGTCCGAATATGGGGAATACACGAAAGGCGAGTTGTTGATTGGGCAGACGTGCACGATGTCATAAGTGCTATAAGTTACCAGCCAGATGGGAAGGGGTTTGTAGTTGGTTCCCTTTCTGGCACTTGCCGGTTTTATGTTGCTTCAGGTAAACATTTCCAGCTCGAGGCGCATATTCGTGTCAATGGAAAGAAGAAAACATCTGGCAACAAGATTACTAGCATTCAGTTTTCCCAGAAAAACCATCAGAGAGTTATGATCACATCACGAGATTCTAAAGTTAGAATATTGGAAGGCGTTGAACTCGTTCAGACATATAAAGGCCTTCCGATGTCAGGAAGTCAGATGTCTGGTTCATTTACATCAAGTGGAAAACACGTTATTTCGGTCGGAGAGGATTCTCGTGTGTATATGTGGAACTCCAATGACTTGGGAAACACTTCTTCCAAGCAGAGAAAATCTGAGAGTTCTTGCGAGTACTTCCGCTCCAAGGGGGTCACCGTTGCAGTACCTTGGTCAGGCATGAGAGCGGAAAGAAGATGCTCTTGCAGCAATTTAGCTGACTCTTCTTCATTAAAGCCACACCAATTAGCGTTTACTCCCGGTTTTAGAGAGTCGGAACGCTTTTCTTTTGGTAGTTGGTTCTCCATTGATGGTTCATGTCGTGGTTCTATGACATGGCCCGAAGAGAATCTTCCTAGTTGGGATTTACCCATTGATGGAAAGCTATGTCTCAAAGATCAATGGTATCACAATTGTGTACCAGAAACATGGGGACTATCAGTTGTTGCAGCTGGTCTTGATGGAACCATTAAGACATTTCACAACTTTGGATTGCCCGTTAGGCTTTAG 1845 0.4081 MLISDERDNDVFFDSLDCLAPSQDSLLTSSQEFGYDIWLNEPLSVNERREKFLQDMGLVHVSVSNVSENLVASEREAKDDKQDASIPGKVDELSCSNQELIHREAGNLNESEFRAIDTGKKIMKNWWQQLVNSGKVVRGKVTSKLNNTSAKKSRRINVRHNKKNWMELSAMYIGQEIRAHKGIIWTMKFSPNGQYLATGGEDGVVRIWRVSSPNALSICFAAEDSVVNKLKDDISFSEKKQLRRPPVVLPNRILKIDESPTQELYGHSNDVMDLAWSDSNVLLSSSMDKTVRMWKIGCDRCLRVFHHKDYVTCIQFNPVNENYFISGSIDGKVRIWGIHERRVVDWADVHDVISAISYQPDGKGFVVGSLSGTCRFYVASGKHFQLEAHIRVNGKKKTSGNKITSIQFSQKNHQRVMITSRDSKVRILEGVELVQTYKGLPMSGSQMSGSFTSSGKHVISVGEDSRVYMWNSNDLGNTSSKQRKSESSCEYFRSKGVTVAVPWSGMRAERRCSCSNLADSSSLKPHQLAFTPGFRESERFSFGSWFSIDGSCRGSMTWPEENLPSWDLPIDGKLCLKDQWYHNCVPETWGLSVVAAGLDGTIKTFHNFGLPVRL 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02477 614 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 212 - -
Car05g02477 614 Gene3D - 166 504 IPR015943 GO:0005515
Car05g02477 614 PANTHER WD REPEAT DOMAIN 44 1 67 IPR040324 -
Car05g02477 614 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 79 614 - -
Car05g02477 614 PANTHER WD REPEAT DOMAIN 44 79 614 IPR040324 -
Car05g02477 614 Pfam WD domain, G-beta repeat 176 208 IPR001680 GO:0005515
Car05g02477 614 Pfam WD domain, G-beta repeat 300 336 IPR001680 GO:0005515
Car05g02477 614 Pfam WD domain, G-beta repeat 259 295 IPR001680 GO:0005515
Car05g02477 614 SMART WD40_4 257 295 IPR001680 GO:0005515
Car05g02477 614 SMART WD40_4 379 429 IPR001680 GO:0005515
Car05g02477 614 SMART WD40_4 339 378 IPR001680 GO:0005515
Car05g02477 614 SMART WD40_4 170 209 IPR001680 GO:0005515
Car05g02477 614 SMART WD40_4 430 471 IPR001680 GO:0005515
Car05g02477 614 SMART WD40_4 298 337 IPR001680 GO:0005515
Car05g02477 614 PRINTS G protein beta WD-40 repeat signature 324 338 IPR020472 -
Car05g02477 614 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Car05g02477 614 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Car05g02477 614 SUPERFAMILY WD40 repeat-like 172 603 IPR036322 GO:0005515
Car05g02477 614 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Car05g02477 614 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 336 - -
Car05g02477 614 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 67 - -
Car05g02477 614 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 304 IPR001680 GO:0005515
Car05g02477 614 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 296 - -
Car05g02477 614 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 336 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02477 Car-Chr5 69899518 69902900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02477 166 470 Miscellaneous Gene Families AT5G08390 21.203 5.01e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02477 K20241 - gmx:100801576 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00704 06 7041285 7044845 Car05g02477 05 69899518 69902900 PCT