Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g00555 | ATGTCTGCTCACGGTGGTTCTTCTCGAAAGAGTGCTTCCTTGTCGAATAGCCCTACGCGGACTAAGAAGAAGGCCCTTGAGTACTCACCTTCCGATCCCAATATTCGTAAATCATTTCCCTCTATGCGCACCACCACGGGAGAGCGAACTGTGAAATCATTGCGACTTTCAAAGGCGTTGACGGTGCCTGAAACAACAACTGTCTATGAAGCTTGTCGTCGGATGGCTGCTCGCAGAGTAGATGCTCTATTACTTACAGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATATAACAACAAGAGTTATTGCTCGTGAGGTTAATCTTGAAGACACACCTTGTTCCAAGGTTATGACAAGGAATCCCATATTTGTCCTTACTGACACTCTTGCTGTCGAAGCGCTCCAAAAGATGGTGCAAGGGAGATTCAGACATTTACCAGTGGTGGAGAATGGAGAAGTGGTTGCTATCCTTGACATAGCCAAGTGTTTATATGATGCCATAGCTCGTATGGAAAGGGCTGCTGAGAAAGGAAAGGCAATTGCAGCAGCTGTTGAAGGTTCCAATTCATCATTCATCGACACTCTCCGGGAGCAGATATTTAAGCCATCATTGTCTACAGTCATTCCTGAGAATTCAAAGATTGTTACTGTTTCACCAACAGACTCAGTTTTGACAACAACAAAAAAGATGCTTGAGCTTCGTGCAAGTGCTGCTGTTGTAACGGTTGACAACAAACCTTGTGGTATCCTTACTTCAAAGGATATCTTGATGCGGGTAATAGCACTAAATTTCCCTCCATCGTCAACTATTGTTGAGAAGGTCATGACTGCAAATCCAGAGTGCGCAGTAATCGATACACCGATTGTTGATGCACTTCACATAATGCACAATGGAAATTTTTTGCATCTTCCTGTGGTTGATAGAGATGGCATTGTTGTTGCTACGGTTGATGTGATTCATATCACTCATGCTGCTGTGGTGACAGCTAGTCAGGTAGGGAATACAGTTAATTTGAATAATGAAGCTGCCAACACCATGATGCAAAAGTTTTGGGACTCAGCCATGGCCTTAACTGCAAATGATGAAGAAGAAGATTTACAAAGCGAAACTTCCTTGAAAATGATTTCTGAGGGAGGAGATACAGGGAGATCCATTCCTTATAATCCGTCAAGCATGCAGACCGCGTTTTCCTTCAAATTACAAGATAAGAAGGGAAGATTGCATAGGTTTACATGCGATACTCGGAGCTTGACAGAGGTTATAACTTCCATCGTTCAGAGAGCTGGCGATGATATTGACCCCAAGAACCTGCCCCAAATTTTGTATGAAGATGAAGAACATGATCAAGTTGTATTGGCTTCAGATAGTGATCTTGCTGCAGCTGTGGACCATGCAAAGACAACTGGTTTGAAGGGATTGAGATTGCACTTAGACTACTCAGGAACATGTGGTTATGGAACCGAATCAAGTTTAAGAAGTTTAGAATATGCTAATTCAGAAGCATGGGTTTCGGCCGGCCGTGCTGTTGCTGCTGGAGCTGCAATCGTTGCCGCCTTAGGTCTATTAGCGTTCTTCAGGCGGAGGTAA | 1599 | 0.4378 | MSAHGGSSRKSASLSNSPTRTKKKALEYSPSDPNIRKSFPSMRTTTGERTVKSLRLSKALTVPETTTVYEACRRMAARRVDALLLTDSNALLCGILTDKDITTRVIAREVNLEDTPCSKVMTRNPIFVLTDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGSNSSFIDTLREQIFKPSLSTVIPENSKIVTVSPTDSVLTTTKKMLELRASAAVVTVDNKPCGILTSKDILMRVIALNFPPSSTIVEKVMTANPECAVIDTPIVDALHIMHNGNFLHLPVVDRDGIVVATVDVIHITHAAVVTASQVGNTVNLNNEAANTMMQKFWDSAMALTANDEEEDLQSETSLKMISEGGDTGRSIPYNPSSMQTAFSFKLQDKKGRLHRFTCDTRSLTEVITSIVQRAGDDIDPKNLPQILYEDEEHDQVVLASDSDLAAAVDHAKTTGLKGLRLHLDYSGTCGYGTESSLRSLEYANSEAWVSAGRAVAAGAAIVAALGLLAFFRRR | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g00555 | 532 | SMART | cbs_1 | 124 | 168 | IPR000644 | - | |
| Car06g00555 | 532 | SMART | cbs_1 | 282 | 330 | IPR000644 | - | |
| Car06g00555 | 532 | SMART | cbs_1 | 58 | 106 | IPR000644 | - | |
| Car06g00555 | 532 | SMART | cbs_1 | 217 | 264 | IPR000644 | - | |
| Car06g00555 | 532 | ProSiteProfiles | PB1 domain profile. | 397 | 484 | IPR000270 | GO:0005515 | |
| Car06g00555 | 532 | Gene3D | - | 34 | 186 | IPR046342 | - | |
| Car06g00555 | 532 | ProSiteProfiles | CBS domain profile. | 55 | 115 | IPR000644 | - | |
| Car06g00555 | 532 | ProSiteProfiles | CBS domain profile. | 121 | 179 | IPR000644 | - | |
| Car06g00555 | 532 | Pfam | PB1 domain | 400 | 482 | IPR000270 | GO:0005515 | |
| Car06g00555 | 532 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Car06g00555 | 532 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Car06g00555 | 532 | ProSiteProfiles | CBS domain profile. | 211 | 271 | IPR000644 | - | |
| Car06g00555 | 532 | MobiDBLite | consensus disorder prediction | 34 | 50 | - | - | |
| Car06g00555 | 532 | SUPERFAMILY | CBS-domain pair | 48 | 164 | IPR046342 | - | |
| Car06g00555 | 532 | Gene3D | - | 207 | 333 | IPR046342 | - | |
| Car06g00555 | 532 | CDD | CBS_pair_MUG70_2 | 215 | 330 | - | - | |
| Car06g00555 | 532 | SUPERFAMILY | CBS-domain pair | 216 | 328 | IPR046342 | - | |
| Car06g00555 | 532 | PANTHER | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT | 22 | 520 | - | - | |
| Car06g00555 | 532 | CDD | CBS_pair_MUG70_1 | 56 | 172 | - | - | |
| Car06g00555 | 532 | SUPERFAMILY | CAD & PB1 domains | 393 | 489 | - | - | |
| Car06g00555 | 532 | PANTHER | CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED | 22 | 520 | IPR034896 | - | |
| Car06g00555 | 532 | SMART | PB1_new | 399 | 484 | IPR000270 | GO:0005515 | |
| Car06g00555 | 532 | Pfam | CBS domain | 57 | 102 | IPR000644 | - | |
| Car06g00555 | 532 | Pfam | CBS domain | 275 | 326 | IPR000644 | - | |
| Car06g00555 | 532 | Pfam | CBS domain | 215 | 261 | IPR000644 | - | |
| Car06g00555 | 532 | Pfam | CBS domain | 119 | 161 | IPR000644 | - | |
| Car06g00555 | 532 | ProSiteProfiles | CBS domain profile. | 279 | 336 | IPR000644 | - | |
| Car06g00555 | 532 | CDD | PB1_MUG70 | 400 | 484 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car06g00555 | Car-Chr6 | 5597222 | 5603183 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g00555 | - | - | gmx:100783514 | 813.913 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car05g02637 | 05 | 71390392 | 71397349 | Car06g00555 | 06 | 5597222 | 5603183 | PCT |