Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00530 ATGGCTATCATCTCCCGAATTGCTTCCTCCTCTCCCTCTCTTCGCTACGACGCAGCACCACTTAACTTCCATCTTCGCAAAACCTCCCTTTCCAACAACTTAACTTTCTCTTCAAACGATTCCGTCAAGAGAATTGTTGCTTCCGGTGGCCGCAGGGTGATTGTTGCTGCTAGTCCTCCAACTGAAGATGCTGTTGTTGCTACTCATCCACTTACCAAACAGGATCTCATCGATTATCTCGCTTCTGGTTGTAAAACCAAAGATAAATGGAGAATAGGTACTGAACATGAAAAGTTTGGTTTTGAGTTGGGAAGCTTGCGTCCTATGAAGTATGAGCAAATATCAGATTTGCTGAATGGCATTGCTGAAAGATTTGACTGGGATAAAGTAATGGAAGGTGATAAAATTATTGGACTCAAACAGGGGAAGCAAAGCATATCATTGGAGCCAGGAGGTCAGTTTGAACTTAGTGGAGCCCCTCTTGAAACTCTGCATCAGACTTGTGCTGAAGTCAATTCGCACCTCTATCAAGTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTCTGGGAATTGGTTTCCAGCCAAAATGGGAACTCAAAGACATACCTATGATGCCAAAGGGAAGATATGAGATTATGAAAAAATACATGCCCAAAGTTGGTTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTACAGGTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCAGGAAATTTCGTGCTGGCCTAGCTTTGCAACCTATTGCAACAGCTCTTTTTGCAAATTCACCCTTCACAGATGGAAAGCCCAATGGATTTGTCAGTATGAGAAGCCATATTTGGACTGACACTGATAAGAACCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCCTTCGGGTTTGAGCAGTACGTTGATTATGCTCTTGATGTTCCAATGTATTTTGTCTATCGGAAAAAGAAGTACATCGACTGTACTGGAATGACCTTCAGGGACTTCTTGGCAGGAAAGCTTCCTTGTATTCCTGGTGAATTACCAACTCTCAATGATTGGGAGAATCATTTGACCACTATATTTCCTGAGGTCAGGCTAAAGAGGTATTTGGAGATGAGAGGTGCTGACGGCGGGCCTTGGAGAAGGTTATGTGCTTTACCAGCATTTTGGGTAGGGATTTTGTACGATGAGATTTCTTTGCAAAGTGTTTTGGATTTAACAGAAGATTGGACTCTGGAAGAAAGACAAATGCTAAGGAATAAGGTTACCGTAACTGGTCTAAGGACGCCATTTCGAGATGGCTTGCTGAAGCATGTTGCTGAAGAGGTTCTAAAGTTGGCAAAGGATGGCTTGGAAAGAAGAGGCTTTAAGGAATCAGGGTTTTTAAATGCGGTAGCTGAGGTGGTCAGAACAGGTGTCACTCCAGCTGAAAGGCTTTTGGAATTGTATAATGGGAAGTGGGAGCAATCTGTAGATCATGTATTTGAGGAATTGCTTTATTAA 1515 0.4284 MAIISRIASSSPSLRYDAAPLNFHLRKTSLSNNLTFSSNDSVKRIVASGGRRVIVAASPPTEDAVVATHPLTKQDLIDYLASGCKTKDKWRIGTEHEKFGFELGSLRPMKYEQISDLLNGIAERFDWDKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWELKDIPMMPKGRYEIMKKYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTDGKPNGFVSMRSHIWTDTDKNRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCTGMTFRDFLAGKLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGILYDEISLQSVLDLTEDWTLEERQMLRNKVTVTGLRTPFRDGLLKHVAEEVLKLAKDGLERRGFKESGFLNAVAEVVRTGVTPAERLLELYNGKWEQSVDHVFEELLY 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00530 504 Pfam Glutamate-cysteine ligase family 2(GCS2) 115 414 IPR006336 GO:0004357|GO:0042398
Car06g00530 504 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 46 504 IPR035434 GO:0004357|GO:0006750
Car06g00530 504 TIGRFAM glu_cys_lig_pln: glutamate--cysteine ligase 70 504 IPR011556 GO:0004357|GO:0006750
Car06g00530 504 Gene3D - 56 504 - -
Car06g00530 504 SUPERFAMILY Glutamine synthetase/guanido kinase 82 502 IPR014746 GO:0003824
Car06g00530 504 PIRSF GCL 58 504 IPR035434 GO:0004357|GO:0006750
Car06g00530 504 PANTHER GLUTAMATE--CYSTEINE LIGASE 46 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00530 Car-Chr6 5404096 5411927 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00530 K01919 - gmx:547545 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00530 06 5404096 5411927 Car06g00530 06 5404096 5411927 ECH
Car08g00220 08 1730781 1735994 Car06g00530 06 5404096 5411927 PCT