Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03198 ATGGGCGAAGAGACACAAATTCAACCTCAACCACAAACCCTAATCGGAACGGAGATTGAACCTCAGCCTCAGTCACAGCCACAAGAGGCTTCTTCCAATAACAccgtcgccgccaccgccgccggcgcTATTATTCCCGTAGAGTCCGAACTCAGCAATGTTCCACCACACATCAATTCACCGGCTACTAAAATCCCCCTCCGTCCTCGAAAGATCCGGAAAGTCTCTCCAGATCCTACGACAACCTCCGAATCTCAATCGGAAACACCAAAATCCGCCACTTCCACCGCTGGAAAATCATGCGGACGACACAGCAACAAATCGGTTCAACAACAAAGAGCCCTAATTGTTCCAAGAATCGTAGCTAGGTCACTTTCGTGCGAAGGAGAAGTCGAAATCGCACTTCGTTACCTTCGCAACGCAGACCCACTCCTCTCCCCGCTCATCGACATTCACCAACCTCCAACATTCGATAATTTCCATACTCCATTTCTTGCCCTAACCCGTAGCATATTGTATCAACAACTGGCATTTAAAGCCGGAACTTCGATTTATACACGCTTTATTGCTCTATGTGGTGGTGAGGCTGGTGTTGTTCCTGAAACTGTTCTTGCCCTAAATCCGCAGCAACTTCGTCAGATTGGGGTTTCTGGTAGAAAAGCTAGTTATCTCCACGATTTGGCTAGGAAGTATCAGAATGGAATACTTTCTGATTCCGCCATTGTAAATATGGATGATAAATCGCTTTTCACAATGCTTACTATGGTTAATGGGATTGGTTCTTGGTCTGTTCATATGTTTATGATTTTCTCGCTTCATAGACCTGATGTTCTTCCCATTAATGATCTTGGTGTTCGGAAGGGGGTTCAGATTCTTTATAATCTTGAAGACTTGCCTCGACCGTCTCAGATGGATCAATTGTGTGAGAAGTGGAGGCCTTATAGGTCTGTTGCTTCATGGTATATGTGGAGGtttgttgaagccaagggaactccttcgagtgccgtggctgttgccactggtgctggattgcagcagcaccagcttgagcagcaccaacagcaacaacagcagcagcagcattcacaacaacagctTATGGATCCCATGAATAGCATGTTTAATATCGGGGCTGCCTGTGCCTGGGGACAGTGA 1155 0.3939 MGEETQIQPQPQTLIGTEIEPQPQSQPQEASSNNTVAATAAGAIIPVESELSNVPPHINSPATKIPLRPRKIRKVSPDPTTTSESQSETPKSATSTAGKSCGRHSNKSVQQQRALIVPRIVARSLSCEGEVEIALRYLRNADPLLSPLIDIHQPPTFDNFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALNPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQILYNLEDLPRPSQMDQLCEKWRPYRSVASWYMWRFVEAKGTPSSAVAVATGAGLQQHQLEQHQQQQQQQQHSQQQLMDPMNSMFNIGAACAWGQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03198 384 SMART endo3end 172 327 IPR003265 GO:0006284
Car05g03198 384 SUPERFAMILY DNA-glycosylase 153 325 IPR011257 GO:0003824|GO:0006281
Car05g03198 384 CDD ENDO3c 164 325 IPR003265 GO:0006284
Car05g03198 384 Gene3D Hypothetical protein; domain 2 161 274 - -
Car05g03198 384 Gene3D - 137 324 - -
Car05g03198 384 MobiDBLite consensus disorder prediction 1 37 - -
Car05g03198 384 PANTHER BNAC05G15000D PROTEIN 8 378 - -
Car05g03198 384 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 8 378 - -
Car05g03198 384 Pfam HhH-GPD superfamily base excision DNA repair protein 169 312 IPR003265 GO:0006284
Car05g03198 384 MobiDBLite consensus disorder prediction 78 108 - -
Car05g03198 384 MobiDBLite consensus disorder prediction 49 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03198 Car-Chr5 76822663 76827347 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03198 K01247 - gmx:100790760 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03198 05 76822663 76827347 Car08g00603 08 5185671 5186900 ECH
Car05g03198 05 76822663 76827347 Car05g03198 05 76822663 76827347 ECH