Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03110 ATGGAAGACGCCGGAGTTTATCGGAACCCCGATAACCTATCGCAAAAGATCGTTGACGTCGCTGCTGGTGAATCACATACTCTCCTTCTCACTGGAGATGGCAGTGTGTACTCTTGGGGTAAAGGAATGTTTGGACGGCTTGGACTTGGTTCTCAAAAAGATGAACCTTTTCCAGTTAAGGTCAACTTTCGAAACCCTAGTGAAACTAGAGACAGTGTTCAAATATTGGGAATTGCTGCTGGTGCTTATCATAGTCTTGCTCTTGCAGAAGATGGATCTGTGTGGTGCTGGGGTTACAATATCTGTATCCTTAATATGCTTGGAGACTCTCATGATTCCCTAGTTCCTTGGTTACTTAGCACTAGCAGGTTTCTTGAGTTGCAACCCCCTGATTCTTCAACGGACCTATCTGAAGCAGAAGGCAAAGCATCACTAAAGATCTGTATTGTCAAAGGAGGAGGAATGATGTCTCTGGCTATCGATAATCGTGGGACCCTGTGGATGTGGGGAAACATCCCACGAGAAAGCAAAGAAGGAGGGCTATCTCTTGTAAGCAGTTTCACTCCAACCCCGGTGTGGGATTTTCATGGTCGAGCTGTTGTCAAGGTTGCATGCGGAAACGAGCACATTGTAGCTCTGGTTAGTGCTACAGAATCACACAAGGATGAAGATCTACTGTGCTACTCTTGGGGTTGTAACAACCATGGCCAATTAGGGTTGGGGGATAGGCAGAGCAGGCTGCATCCAGAAGTAGTAAAAATATCCGACGAGGAGTCTCTCTGGACAATTGATGAGGTTGCATGCGGTGCCTTTCACACTGCTTTGCTCGCTCGCAAAAAGAAACTCGGCGACACATTAGAAAGCATGTGCTGGACTTTTGGCCTTGGTGAAAATGGCCAACTCGGGCATGGTACAACGCAAAGCGCTTTGTTTCCTGCACCCGTTAAAGAATTGCCACAAAATGTATATCTTATTTCTGTTGACTGTGGCTTGTTTCATACAAGTGTTGTTTCTTCAAATGGGGATGTGTGGTCATGGGGAATGGTGAAAGGTCTTGGCTTATGTCCTGACGCTAGTCGTGCTGAAACAGATTGTGGCGATGCCCTCTCTCCCCTTCGCATCTCATGTGAGCCATATCAACCTATTTTTCCAGGTCCTGTTAAAGTCGCGTGTGGGGCTGCACATACTGTTGTTGTTGCACAGGAGGGGCATAAGGTGTGGTCTTGGGGTAGGGGAAGGAGTGGAGTTCTTGGGAATGGTAAGGAAATGGATAGTTACGTTCCCACCATCGTGCTGTGGCCTCCGATAACAAAGGATTTCAAGGAAGAGGATTTGAAGAGCTCTGATGAGCAAGATAAGGTGAAagaaaagaaaaccgaagcaataacagaaacagaTGAGAAATTATCCTCGGCCATGAATGAGGTGAAGCTGCTTCAAACAAAGCTATCTATAATGGAAAAATATGCCAGTATACTTCATGGTTCTATTTTTGGAAAACCTTTTGATGAACAAGATATTCCTGTTTTGATGCGGAATTCAGATTCATTGGATATTGCAAAAGAATGGGAGAACATGTTAGAGGCAGCAGATGATAGGAAGCTAATTAGGATGGAAATGTTTTACCGTGACATGCTAGCTGGTGTGAAAGATAAATTAATGAAGAGAAAGATCAAAGAAATTATAAAGGAATGTCTCCAATCTTCAGAGGTAAATAATAATTAG 1725 0.4371 MEDAGVYRNPDNLSQKIVDVAAGESHTLLLTGDGSVYSWGKGMFGRLGLGSQKDEPFPVKVNFRNPSETRDSVQILGIAAGAYHSLALAEDGSVWCWGYNICILNMLGDSHDSLVPWLLSTSRFLELQPPDSSTDLSEAEGKASLKICIVKGGGMMSLAIDNRGTLWMWGNIPRESKEGGLSLVSSFTPTPVWDFHGRAVVKVACGNEHIVALVSATESHKDEDLLCYSWGCNNHGQLGLGDRQSRLHPEVVKISDEESLWTIDEVACGAFHTALLARKKKLGDTLESMCWTFGLGENGQLGHGTTQSALFPAPVKELPQNVYLISVDCGLFHTSVVSSNGDVWSWGMVKGLGLCPDASRAETDCGDALSPLRISCEPYQPIFPGPVKVACGAAHTVVVAQEGHKVWSWGRGRSGVLGNGKEMDSYVPTIVLWPPITKDFKEEDLKSSDEQDKVKEKKTEAITETDEKLSSAMNEVKLLQTKLSIMEKYASILHGSIFGKPFDEQDIPVLMRNSDSLDIAKEWENMLEAADDRKLIRMEMFYRDMLAGVKDKLMKRKIKEIIKECLQSSEVNNN 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03110 574 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 20 30 IPR000408 -
Car05g03110 574 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 266 276 IPR000408 -
Car05g03110 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 341 402 IPR000408 -
Car05g03110 574 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 4 572 - -
Car05g03110 574 SUPERFAMILY RCC1/BLIP-II 144 435 IPR009091 -
Car05g03110 574 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 203 213 IPR000408 -
Car05g03110 574 Coils Coil 462 482 - -
Car05g03110 574 PRINTS Chromosome condensation regulator RCC1 signature 75 88 IPR000408 -
Car05g03110 574 PRINTS Chromosome condensation regulator RCC1 signature 399 420 IPR000408 -
Car05g03110 574 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Car05g03110 574 PRINTS Chromosome condensation regulator RCC1 signature 164 180 IPR000408 -
Car05g03110 574 PRINTS Chromosome condensation regulator RCC1 signature 203 219 IPR000408 -
Car05g03110 574 PRINTS Chromosome condensation regulator RCC1 signature 330 348 IPR000408 -
Car05g03110 574 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 4 572 - -
Car05g03110 574 Pfam Regulator of chromosome condensation (RCC1) repeat 227 276 IPR000408 -
Car05g03110 574 Pfam Regulator of chromosome condensation (RCC1) repeat 33 88 IPR000408 -
Car05g03110 574 Pfam Regulator of chromosome condensation (RCC1) repeat 291 336 IPR000408 -
Car05g03110 574 Pfam Regulator of chromosome condensation (RCC1) repeat 340 399 IPR000408 -
Car05g03110 574 SUPERFAMILY RCC1/BLIP-II 15 118 IPR009091 -
Car05g03110 574 Gene3D - 4 222 IPR009091 -
Car05g03110 574 Gene3D - 223 480 IPR009091 -
Car05g03110 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 340 IPR000408 -
Car05g03110 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 164 216 IPR000408 -
Car05g03110 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 225 279 IPR000408 -
Car05g03110 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 91 IPR000408 -
Car05g03110 574 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 78 88 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03110 Car-Chr5 75896039 75898856 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03110 - - gmx:100815199 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03110 05 75896039 75898856 Car05g03110 05 75896039 75898856 ECH
Car05g03110 05 75896039 75898856 Car04g03013 04 57999790 58002759 PCT