Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03063 ATGTCTTCATCTTATCTTCCTGCCACAACAGATTCAATTGCTCAGGCATTGGAGGCCAAAGACCCTTCTGATGCGATCTCCATTCTTTATCGCGTACTTGATGATCCTTCTTCTTCACCAGAAGCTTTGCGTATGAAAGAGCAGGCCATCACAAACCTTACCGACCTTCTCAGGCAAGAGAACAGAGGAGAGGATCTGCGCAGCCTTCTCACCCAATTGAGGCCCTTTTTCTCCTTGATTCCTAAGGCAAAAACTGCAAAGATTGTAAGGGGAATAATTGACTCGGTTGCTAAAATACCAGGAACATCTGATCTACAAATTTCACTCTGTAAAGAAATGGTGCAATGGACTCGTGCTGAAAAGCGTACTTTTCTGAGGCAACGAGTTGAAGCAAGGCTTGCAGCGCTTTTGATGGAAACTAAGGAGTATTCTGAAGCTTTGACTCTTCTTTCTGGGTTGGTCAAAGAGGTTAGGAGATTAGATGACAAGCTTCTTCTCGTAGACATCGACTTGCTGGAAAGTAAGCTACACTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACAGCCGCAAGAACAGCTGCAAATGCTATTTATGTGCCTCCTGCTCAACAAGGTGCCATAGATCTGCAGAGTGGAATACTGCATGCCGAGGAGAAAGATTACAAAACTGCATACAGCTATTTCTTTGAAGCCTTCGAGTCTTTTAATGCTCTTGAAGACCCCAAAGCTGTTTTCAGCCTGAAATATATGTTGTTGTGTAAGATCATGGTGAGTCAAGCTGATGATGTGGCTGGAATTATTTCTTCAAAGGCAGGATTGCAATATGTTGGACCAGACTTGGACGCTATGAAAGCTGTTGCCGACGCTCATTCAAAGCGATCCCTTAAGttgttcgaaactgctttgcaggactacaaggcacagttggagGAAGACCCAATTGTCCACAGACACCTTTCGTCCCTATACGATACCCTTCTGGAGCAGAATCTGTGTAGATTGATTGAGCCATTCTCAAGAGTTGAGATTGCTCATATTGCAGAGCTTATTGAGCTTCCCATTGACCACGTGGAGCGGAAGATGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCTGGATGCCTCATCATTTTTGACGATCCCAAGACTGATGCGATATATCCTGCAACTTTAGAGACCATTTCCAATGTCGGGAAAGTCGTCGACAGTCTTTATGTTAGATCTGCCAAGATAATGGCGTGA 1269 0.4279 MSSSYLPATTDSIAQALEAKDPSDAISILYRVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRVEARLAALLMETKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALQDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKMSQMILDKKFAGTLDQGAGCLIIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03063 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 - -
Car05g03063 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 128 IPR040773 -
Car05g03063 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Car05g03063 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Car05g03063 422 SMART PINT_4 320 403 IPR000717 -
Car05g03063 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Car05g03063 422 SUPERFAMILY TPR-like 129 323 IPR011990 GO:0005515
Car05g03063 422 Gene3D - 46 421 - -
Car05g03063 422 PANTHER - 2 422 - -
Car05g03063 422 Pfam PCI domain 285 386 IPR000717 -
Car05g03063 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 2 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03063 Car-Chr5 75424132 75427553 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03063 K03036 - gmx:100780845 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03063 05 75424132 75427553 Car04g03079 04 58851342 58854900 PCT