Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03079 ATGTCTTCTTTTCTTCCTGCCACAACAGAGTCCATTGCTCAGGCATTGGAGGCTAAAGATCCATCTGAGGCCATTTCCATTCTTTATCGTGTGCTTGGTGATCCTTCATCTTCTCCCGAAGCTCTGCGCATGAAAGAGCAGGCCATCACAAACCTCACCGACCTTCTCAGGCAAGAGAATAGAGCAGAGGATCTGCGTAGCCTTCTCACTCAATTGAGGCCCTTCTTTTCGTTGATTCCTAAGGCAAAAACTGCAAAGATTGTGAGGGTAATAATTGATTCTGTTGCTAAAATACCAGGGACATCTGATTTACAAATTTCACTCTGCAAAGAAATGGTGCAATGGACTCGCGATGAAAAGCGTACCTTTCTTAGGCAGCGAGTTGAGGCAAGGCTTGCCACTCTTTTGATGGAAACTAAGGAATATTCACAAGCTTTGACTCTACTTAATGGCTTGGTCAAAGAGGTTAGAAGATTAGATGATAAACTCCTACTTGTAGACATAGACTTGCTTGAAAGCAAGCTACACTTCTCCTTAAGAAATTTTCCCAAGGCAAAAGCTGCACTAACAGCTGCAAGAACTGCTGCTAATGCTATTTATGTTCCACCGGCTCAACAAGGTGCGATAGATTTGCAGAGTGGGATTCTCCATGCTGAAGAGAAGGATTACAAAACTGCATATAGTTATTTCTTTGAAGCTTTTGAGTCTTTCAATGCTCTTGAAGATCCCAAAGCTGTCTTTAGCCTAAAATATATGTTGTTGTGTAAGATCATGGTGAGTCAAGCAGACGATGTAGCTGGAATCATATCCTCTAAAGCAGGCCTGCAATATGTTGGTCCCGACTTGGATGCGATGAAAGCTGTTGCAGATGCTCATTCTAAAAGATCCCTAAAATTATTTGAAACTGCTTTGCGAGACTACAAGGCGCAGTTGGAGGAAGATCCAATTGTTCACAGGCACTTGTCATCCCTGTATGATACCCTTCTTGAGCAGAATCTTTGCAGATTGATTGAGCCATTCTCAAGGGTTGAGATCGCACATATTGCTGAACTCATTGAACTTCCCATGGATCATGTGGAGCGGAAGATGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGTACTCTGGATCAGGGTGCTGGATGCCTTGTCATATTTGATGACCCTAAGACTGATGCTATATATCCTGCAACATTAGAAACCATTTCTAATGTTGGGAAAGTTGTGGACAGTCTTTTCGTAAGGTCCGCCAAGATAATGGCATGA 1266 0.4273 MSSFLPATTESIAQALEAKDPSEAISILYRVLGDPSSSPEALRMKEQAITNLTDLLRQENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRVIIDSVAKIPGTSDLQISLCKEMVQWTRDEKRTFLRQRVEARLATLLMETKEYSQALTLLNGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNFPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPMDHVERKMSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLFVRSAKIMA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03079 421 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 13 127 IPR040773 -
Car04g03079 421 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 392 417 IPR040780 -
Car04g03079 421 Gene3D - 45 420 - -
Car04g03079 421 PANTHER - 2 421 - -
Car04g03079 421 ProSiteProfiles PCI domain profile. 222 390 IPR000717 -
Car04g03079 421 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 2 421 - -
Car04g03079 421 SUPERFAMILY TPR-like 130 322 IPR011990 GO:0005515
Car04g03079 421 SMART PINT_4 319 402 IPR000717 -
Car04g03079 421 Pfam PCI domain 284 385 IPR000717 -
Car04g03079 421 SUPERFAMILY "Winged helix" DNA-binding domain 313 395 IPR036390 -
Car04g03079 421 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 319 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03079 Car-Chr4 58851342 58854900 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03079 K03036 - twl:119993222 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03063 05 75424132 75427553 Car04g03079 04 58851342 58854900 PCT