Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03027 ATGGCCATTTTCCTCTTCACTACTACACTTCCATTTCTATCTCTACCAACAACCACTCTCAATTCATCAAAATCCACTCTAACATCAATTCTCACTAACCCAACAACACTACATCACTTCCCAGCCATCGCCATGAACTTGTGCACCACCACTTCAGCAGCATCTTGTTCCTCAATGCAGCACGTGCCAGAGCAAGATTCTAACCAAACGGAACGTGTAGCAAACCTAATATTCCAAAGGTACACATCCAACAACACCAACAGGAGTGGTAAAGGTACCGCCATCGTGTGGTTCAGAAACGATCTAAGGGTTTTGGACAATGAGGCTCTCTACAAGGCTTGGCTTTCCTCACAAACTATTTTGCCTGTTTACTGTGTTGATCCTCGTCTCTTTGCCACCACTTACCATTTTGGATTTCCAAAAACCGGAGCATTGAGAGCACAGTTTCTCCTTGAAAGTTTGGCTGACTTGAGGAAGAATCTGATGAAACGGGGACTTAATTTGCTTATTCAACATGGAAAACCTGAAGATGTTCTTCCTTCTCTAGCTAAAACTTTTGGAGCTCATACAGTTTATGCACAGAAAGAAACTTGTAGTGAGGAGGTGAATGTTGAAAGGTCTGTCAGCAGATGTCTTCAACAAGTGGGGGTGCCATCCGAGGAATCTGTTGGGGCGCCAACAACTTCAAACAGCCACCCGAAGTTACAGTTTGTTTGGGGCACCACAATGTACCACCATGGCGATCTTCCTTTTGATGTCTCATGTTTGCCGGATGTTTATACTCAATTTCGTAAGGCCATTGAAGCCAAATGCACAGTGCGCTCATGCATCAAACTGCCAGCATCACTTGGACCACCTCCCGCAATTGAAGATTGGGGATGTCTTCCTTCATTGGAGCAGCTAGGACTTTACTCACAGAATGTTAGCAAGGGGATGAAATTTGTAGGGGGTGAAACTGCCGCATTGAGCAGAGTATATGAATACTTTTGGAAGAAGGATTTACTAAAGGTGTATAAAGAGACCCGAAATGGGATGTTAGGGCCTGATTATTCTACAAAATTCTCGCCATGGCTTGCATCCGGAAGCTTGTCTCCTCGTCTCATATATGAAGAGGTGAAGAGATATGAGAATGAAAGACAAGCAAATAGTTCTACCTACTGGGTTTTGTTTGAGTTGATATGGAGGGATTACTTTAGGTTTTTATCAGTCAAATATGGAAATTTGCTTTTCCATATAGGTGGACCTAGGAATGTTCAGCATAATTGGAGCCAAGACAAGAAATTATTTGAAGCTTGGAGAGATGGTTGTACAGGGTATCCACTCATAGATGCCAACATGAAAGAACTATCAACTACAGGTTTTATGTCAAACCGAGGACGACAGATTGTGTGTTCCTTTCTAGTTCGTGATATGGGAATAGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGAGTTGGGAATGATCCCAGGGAAGACCGTTATTTCAGCATACCAAAACAAGCACAAACATATGACCCAGAAGGTGAATATGTGGCATACTGGTTGCCACAGTTACGAATAATCGCGAAAGATAAAAGGAATTTTCCTGTGGAATTCAAGTCTTTGTTTCTCGATTGCAACCCTCGTGCTACGTGTTTACGTCGTGTTTGGAAACTGCAACAACACAAACTCCCCCAATTTTCAAACCAATTACTTCTTCCTCCGATAATCCCCACCACCATTTACATATTCACTCCTCACCTGAGATCTGATCAATCCACACAATTAATCAACCACTCGACGAGGAAACGAGAGGGAATGGCTGATGATGATAAAGCAGTTGGGGAAGGTGAAAAGAAGGAGACAAGTCCTACTGCTGCTGCTTCTGGGAATGAAAAGAAGAAGCAGCGCAAGGGATTCATTTCAAGAATTTGGAATGGAATTTTTAGGTTACACGGCGATGATTTTGAGAAGAGGCTTCAATATATTTCTAAAGAGGAAGCTGCTGTTATTGCTAGAGTGACTAGGAGATCGCGATCCAGGAGGCGGATGTCGCGGAATCTTATTATATTTTCTGTTTTATTTGAGGTCATTGCTGTAGGCTATGCTATTATGACAACAAGATCAATTGATATGGATTGGAAAATGAGGGCAATCCGGGTTTTACCAATGTTTCTTTTGCCGGCACTATCATCTGCTACTTATTCAGCATTTATCAGCTTCACAAGAATGTGTGATCGTAGGGACCAGAATATCCTTGAAAAGCTTCGAGCTGAAAGGCAGGCAAAAATTGATGAGCTCAAAGAAAAGACAAACTATTACACTACACAGCAGCTTATTCAGAGATATGACCCAGACCCGGCCGCAAAGGCAGCTGCTGCAACTGTTTTGGCGTCTAAGTTGGGTGCAGATTCTGGTCTGAAATTGTACATGGGCGATGAATCCAATCTCAGTGGTGCTTCAACAGGGAAGAGCAATGATGTTGAACTTGTGCAGTCCTCTGGACTTCGAAATCGGAAACAAGTTCACACTAGGTCCACTAGTCTTGGGACAATCTCACAAAATTTTGGCAATCAACAATTAGTAGGTTCAGAGGGAATGGATCAAAGCGTTACCTCTGAGTATAATCAACCTGTTGTTGTTGAACATCACCAACCTCAAAGTTCAAACCCACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGTGAGGATCCAACGCAGTCTTATGCCCTCATATGTGGTCACTGCTACATGCATAACGGTCTTTCTCGGAAGGAGGATTTCCCATTTATCACTTACTACTGCCCACATTGCCATGCACTGAACAAACCGAAGCAAATGGATGGGAGCATCTCTGGTCTTCATTCTCCTAATGCAGGGTCTATGCAAATGGATGAGCGTATCTTGGGTCTTCCTTCCCCTAATGCGGGGTCTCCAAAAACAGGCGACAGTGAGGCAGTTTTAAATGCTACCGCCTCTGTTGCAGAGAGCATAATCACAAGCAATAGTCCCGTAGATGCTATCACTGAGATTGAGGAAATATCAGAAAGAACAAGTATTGAGGATAAAACTGATTGA 3126 0.4309 MAIFLFTTTLPFLSLPTTTLNSSKSTLTSILTNPTTLHHFPAIAMNLCTTTSAASCSSMQHVPEQDSNQTERVANLIFQRYTSNNTNRSGKGTAIVWFRNDLRVLDNEALYKAWLSSQTILPVYCVDPRLFATTYHFGFPKTGALRAQFLLESLADLRKNLMKRGLNLLIQHGKPEDVLPSLAKTFGAHTVYAQKETCSEEVNVERSVSRCLQQVGVPSEESVGAPTTSNSHPKLQFVWGTTMYHHGDLPFDVSCLPDVYTQFRKAIEAKCTVRSCIKLPASLGPPPAIEDWGCLPSLEQLGLYSQNVSKGMKFVGGETAALSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRLIYEEVKRYENERQANSSTYWVLFELIWRDYFRFLSVKYGNLLFHIGGPRNVQHNWSQDKKLFEAWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRIIAKDKRNFPVEFKSLFLDCNPRATCLRRVWKLQQHKLPQFSNQLLLPPIIPTTIYIFTPHLRSDQSTQLINHSTRKREGMADDDKAVGEGEKKETSPTAAASGNEKKKQRKGFISRIWNGIFRLHGDDFEKRLQYISKEEAAVIARVTRRSRSRRRMSRNLIIFSVLFEVIAVGYAIMTTRSIDMDWKMRAIRVLPMFLLPALSSATYSAFISFTRMCDRRDQNILEKLRAERQAKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKLYMGDESNLSGASTGKSNDVELVQSSGLRNRKQVHTRSTSLGTISQNFGNQQLVGSEGMDQSVTSEYNQPVVVEHHQPQSSNPQDGGWIARIAALLVGEDPTQSYALICGHCYMHNGLSRKEDFPFITYYCPHCHALNKPKQMDGSISGLHSPNAGSMQMDERILGLPSPNAGSPKTGDSEAVLNATASVAESIITSNSPVDAITEIEEISERTSIEDKTD 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03027 1041 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 908 958 IPR019273 -
Car05g03027 1041 Gene3D - 241 410 - -
Car05g03027 1041 PRINTS DNA photolyase signature 437 453 IPR002081 -
Car05g03027 1041 PRINTS DNA photolyase signature 457 475 IPR002081 -
Car05g03027 1041 PRINTS DNA photolyase signature 496 510 IPR002081 -
Car05g03027 1041 Coils Coil 762 785 - -
Car05g03027 1041 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 312 538 IPR036134 -
Car05g03027 1041 PANTHER CRYPTOCHROME 78 551 IPR002081 -
Car05g03027 1041 Pfam FAD binding domain of DNA photolyase 390 546 IPR005101 -
Car05g03027 1041 MobiDBLite consensus disorder prediction 1021 1041 - -
Car05g03027 1041 MobiDBLite consensus disorder prediction 614 631 - -
Car05g03027 1041 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 92 227 IPR006050 -
Car05g03027 1041 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 411 558 - -
Car05g03027 1041 Gene3D HUPs 56 240 IPR014729 -
Car05g03027 1041 PANTHER CRYPTOCHROME DASH 78 551 - -
Car05g03027 1041 TIGRFAM crypto_DASH: cryptochrome, DASH family 93 536 IPR014133 GO:0003913|GO:0006281
Car05g03027 1041 MobiDBLite consensus disorder prediction 610 646 - -
Car05g03027 1041 Pfam DNA photolyase 94 277 IPR006050 -
Car05g03027 1041 MobiDBLite consensus disorder prediction 1026 1041 - -
Car05g03027 1041 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 91 290 IPR036155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03027 Car-Chr5 75128447 75139250 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03027 K25656 - gmx:100783312 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03027 05 75128447 75139250 Car05g03027 05 75128447 75139250 ECH
Car04g03122 04 59332357 59336841 Car05g03027 05 75128447 75139250 PCT