Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02956 ATGTCTAAAGTTTTCGGCTTTACTGGAAGTGATGATTTTTGTGCTGGGAGGTCCATGTACCTTAATCCAAAGGAAGCAGGTCTCTTCTTGTCTCTTGGCCTTCAAGAATATGCTTACTTGCCTAATCAGAAGAGATCTCGCATCAGCGTTCCATTTGATTTCAGCGGAGAATGGATTGAGCAGAAGCCGGAGACATCCATTGAAACATTACCGGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGCAGGAAAAGATAGGAGTTTATGCGCTTCTGTATCTAAGCGCTGGCTTATGCTTCTAAGCAACATTTGTAAGGATGAAATCTGTAGCAACATAAGTACTGGAAATGGAAACGAGGATGGTGATGATCAAGACTTTGGCGATGAAGGGTATCTTTCTCGAAACTTGGAGGGAAAAAAGGTAACCGATGTTAGACTAGCTGCCATTGCTGTTGGTACAGCATCTCGAGGAGGATTAGGGAAGCTTTCAATTCATGGAAGCAATTTGGATCGTCCGTTGACTGACATAGGTCTCAAGGCAGTTGCCCATGGCTGCCCTTCTCTTAAGATTTTCAATCTTTGGGATGTTGCTACCATTAGTGACGAAGGCCTGATTGAGATTGCTAAAGGCTGTCACCAGTTAGAAAAGCTTGATCTTTGCAAGTTGCCCACAATTTCTGACAAGGCTTTAGTTGCAGTAGCAAAAAACTGCCTGAAACTGATTGAGTTATCGATAGACTCGTGTCCTAATATTGGTAATGAAGGTCTACAGGCTATTGGGAAGTGGTGTCCCAATATAAGGTCTATAACGATTAAAAACTGTCACGGAGTTGGTGATCAGGGAATTGCTAGCCTGATATCTTCAGCATCCTTTGGTCTAACAAAGTTGACACTTGATTCGCTAGTTGTTTCTGATTTCTCACTAGCAGCTATCGGACATTATGGCTTTGCTGTTACTGACCTTGTCCTAAATTCCCTCCCAAATGTCACCGAGAAGGGATTCTGGGTTATGGGTAGTGGCCAAGGACTGCAGAAACTGACATCACTCACAGTTGATTTCTGCCCCGGAGTAACAGATACCGGACTTGAAGCTATAGGAAAGGGTTGTCCAAATGTGAAAAACTTTCAGCTTCACAGGTGTGCGTTTCTGTCGGACAATGGGTTGGTATCATTCACCAAGGCTGCTCCATCAATTGAGAGGCTACAATTGGAAGAGTGCCACAGGGTTACCCAATTTGGGCTTTTCGGTGTCCTTTTTAACTGTGGAGCAAAATTGAAGGCTCTTACTTTGATAAGATGCTATGGGATCAAAGATTTGAATCTGGAATTTCCAGCAGTATCTCCTTGCAAATCAGTATTGTCATTATCAATCCGTAAATGCCCTGGAGTTGGTAATTCTACTCTTGCTGTCCTTGGGAAGCTCTGTCCTCTGCTTCAGCATCTTGAATTGATTGGACTCGAGGGAATAACAGACGCAGGGTTTCTTTCGCTGCTTGAGAGGTCAAAGGCCAGTTTGTCTAATGTTAATCTAAGTGGTTGCATTAATCTCACAGATGCAGGAGTTTTGCCCATGGTCAAGTTGCACGGATCGACTCTTGGTGTGCTGAACCTCAATTGTTGTAAAAAAGTCGGTGATACTAGCTTGACTGCAATTGCAGGCAATTGTCCATTGCTCAGTGATCTTGATGTTTCCAGGTTGCTCATTGGTTTCAAACAAGAGCTTGAGCGCTTTGAAAAAATTGGGTCATTCCCTCGAGGGATTAAATATAAAAAATTGCAAGTCAATCAGCAGCCGTACAGTCGACAAGCTTGTGGAACATCTGTGGATGTGTGA 1839 0.4345 MSKVFGFTGSDDFCAGRSMYLNPKEAGLFLSLGLQEYAYLPNQKRSRISVPFDFSGEWIEQKPETSIETLPDECLFEILRRLPAGKDRSLCASVSKRWLMLLSNICKDEICSNISTGNGNEDGDDQDFGDEGYLSRNLEGKKVTDVRLAAIAVGTASRGGLGKLSIHGSNLDRPLTDIGLKAVAHGCPSLKIFNLWDVATISDEGLIEIAKGCHQLEKLDLCKLPTISDKALVAVAKNCLKLIELSIDSCPNIGNEGLQAIGKWCPNIRSITIKNCHGVGDQGIASLISSASFGLTKLTLDSLVVSDFSLAAIGHYGFAVTDLVLNSLPNVTEKGFWVMGSGQGLQKLTSLTVDFCPGVTDTGLEAIGKGCPNVKNFQLHRCAFLSDNGLVSFTKAAPSIERLQLEECHRVTQFGLFGVLFNCGAKLKALTLIRCYGIKDLNLEFPAVSPCKSVLSLSIRKCPGVGNSTLAVLGKLCPLLQHLELIGLEGITDAGFLSLLERSKASLSNVNLSGCINLTDAGVLPMVKLHGSTLGVLNLNCCKKVGDTSLTAIAGNCPLLSDLDVSRLLIGFKQELERFEKIGSFPRGIKYKKLQVNQQPYSRQACGTSVDV 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02956 612 SUPERFAMILY F-box domain 60 104 IPR036047 GO:0005515
Car05g02956 612 PANTHER UNCHARACTERIZED 16 568 - -
Car05g02956 612 Gene3D - 60 111 - -
Car05g02956 612 Gene3D Ribonuclease Inhibitor 444 502 IPR032675 -
Car05g02956 612 SMART LRR_CC_2 265 290 IPR006553 -
Car05g02956 612 SMART LRR_CC_2 345 370 IPR006553 -
Car05g02956 612 SMART LRR_CC_2 187 212 IPR006553 -
Car05g02956 612 SMART LRR_CC_2 504 529 IPR006553 -
Car05g02956 612 SMART LRR_CC_2 239 264 IPR006553 -
Car05g02956 612 SMART LRR_CC_2 213 238 IPR006553 -
Car05g02956 612 SMART LRR_CC_2 397 422 IPR006553 -
Car05g02956 612 SMART LRR_CC_2 371 396 IPR006553 -
Car05g02956 612 SMART LRR_CC_2 531 556 IPR006553 -
Car05g02956 612 SMART LRR_CC_2 451 476 IPR006553 -
Car05g02956 612 SMART LRR_CC_2 477 502 IPR006553 -
Car05g02956 612 Pfam Leucine Rich repeat 239 261 IPR001611 GO:0005515
Car05g02956 612 Pfam Leucine Rich repeat 346 367 IPR001611 GO:0005515
Car05g02956 612 Gene3D Ribonuclease Inhibitor 503 573 IPR032675 -
Car05g02956 612 Gene3D Ribonuclease Inhibitor 134 251 IPR032675 -
Car05g02956 612 SUPERFAMILY RNI-like 174 415 - -
Car05g02956 612 SMART fbox_2 70 111 IPR001810 GO:0005515
Car05g02956 612 Gene3D Ribonuclease Inhibitor 252 443 IPR032675 -
Car05g02956 612 Pfam F-box domain 70 106 IPR001810 GO:0005515
Car05g02956 612 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 568 - -
Car05g02956 612 SUPERFAMILY L domain-like 343 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02956 Car-Chr5 74510567 74513103 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02956 K14515 - gmx:100805418 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02956 05 74510567 74513103 Car05g02956 05 74510567 74513103 ECH
Car04g03184 04 60171064 60174733 Car05g02956 05 74510567 74513103 PCT